DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2

by Agrafiotis, A., Azizoglu, A., Beisel, C., Burcklen, E., Chang, C.-H, Dounas, A., Ehling, R., Feldkamp, M., Gao, B., Han, J., Hong, K.-L, Nadeau, S., Neumeier, D., Nissen, I., Oxenius, A., Petrillo, E., Reddy, S.T, Rudolf, F., Savic, M., Spahr, M., Stadler, T., Valenzuela, C., Yermanos, A.
Published 2022

Computational characterization and analysis of molecular sequence data of Elizabethkingia meningoseptica

by Girdhar, N., Krishnamachari, A., Kumari, N.
Published 2022

Genomic correlation, shared loci, and causal relationship between obesity and polycystic ovary syndrome: a large-scale genome-wide cross-trait analysis

by Deng, Q., Jiang, X., Kraft, P., Liu, Q., Stener-Victorin, E., Zhu, Z.
Published 2022

High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria

by Břinda, K., Che, Y., Hanage, W., Xu, X., Yang, C., Yang, Y., Zhang, T.
Published 2022

qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)

by Christie, N., Delhomme, N., Mähler, N., Mannapperuma, C., Mizrachi, E., Myburg, A.A, Naidoo, S., Ployet, R., Street, N.R, van der Merwe, K.
Published 2021

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases

by Byrne, D.P, Eyers, P.A, Gravel, N., Huang, L.-C, Kannan, N., Taujale, R., Venkat, A., Yeung, W.
Published 2021

SWnet: a deep learning model for drug response prediction from cancer genomic signatures and compound chemical structures

by Chen, X., Ge, H., Qian, D., Tian, L., Wang, P., Zuo, Z.
Published 2021

driveR: a novel method for prioritizing cancer driver genes using somatic genomics data

by Sezerman, O.U, Ülgen, E.
Published 2021

digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes

by Martínek, T., Puterová, J.
Published 2021

Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes

by Demir, E., Grzadkowski, M.R, Holly, H.D, Somers, J.
Published 2021

Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data

by Baker, S.J, Frisby, T.S, Hoang, Q.M, Kingsford, C., Langmead, C.J, Marçais, G.
Published 2021

Ranking cancer drivers via betweenness-based outlier detection and random walks

by Erten, C., Houdjedj, A., Kazan, H.
Published 2021

ViR: a tool to solve intrasample variability in the prediction of viral integration sites using whole genome sequencing data

by Bonizzoni, M., Carlassara, M., Crava, C., Gasmi, L., Pischedda, E., Zucca, S.
Published 2021

Whole genome sequencing and the application of a SNP panel reveal primary evolutionary lineages and genomic variation in the lion (Panthera leo)

by Bauer, H., Bertola, L.D, Chege, M., de Iongh, H.H, Laros, J.F.J, Lesilau, F., Patterson, B.D, Schaap, O.D, Sogbohossou, E.A, Tumenta, P.N, Vermaat, M., Vrieling, K., White, P.A
Published 2022

BreakAlign: a Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations

by Belshaw, R., Frater, J., Jones, M., Klenerman, P., Magiorkinis, G., Marchi, E.
Published 2022