Lnc-NTF3-5 promotes osteogenic differentiation of maxillary sinus membrane stem cells via sponging miR-93-3p

by Chen, L.-L, Chen, S.-L, Peng, W., Wang, J., Weng, J.-Q, Zhu, S.-X
Published 2018

Identifying Cell-Type-Specific Metabolic Signatures Using Transcriptome and Proteome Analyses

by Cheng, C.-W, Gebert, N., Lewis, C.A, Ori, A., Rahman, S.
Published 2021

Quantitative prediction of conditional vulnerabilities in regulatory and metabolic networks using PRIME

by Arrieta-Ortiz, M.L, Baliga, N.S, Immanuel, S.R.C, Lopez Garcia de Lomana, A., Pan, M., Peterson, E.J.R, Ruiz, R.A
Published 2021

Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism

by Hooiveld, G.J.E.J, Keijer, J., Martins dos Santos, V.A.P, Sinha, N., Suarez-Diez, M., van Schothorst, E.M
Published 2021

EFMlrs: a Python package for elementary flux mode enumeration via lexicographic reverse search

by Buchner, B.A, Zanghellini, J.
Published 2021

An updated genome-scale metabolic network reconstruction of Pseudomonas aeruginosa PA14 to characterize mucin-driven shifts in bacterial metabolism

by Dräger, A., Dunphy, L.J, Lewis, T., Papin, J.A, Payne, D.D, Renz, A.
Published 2021

VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology

by Brinkrolf, C., Hofestädt, R., Ochel, L.
Published 2021

SCOUR: a stepwise machine learning framework for predicting metabolite-dependent regulatory interactions

by Lee, J.Y, Nguyen, B., Orosco, C., Styczynski, M.P
Published 2021

The BioCyc Metabolic Network Explorer

by Karp, P.D, Paley, S.
Published 2021

The effects of model complexity and size on metabolic flux distribution and control: case study in Escherichia coli

by Fengos, G., Hameri, T., Hatzimanikatis, V.
Published 2021

Guidelines for correlation coefficient threshold settings in metabolite correlation networks exemplified on a potato association panel

by Maruenda, H., Toubiana, D.
Published 2021

LimeMap: a comprehensive map of lipid mediator metabolic pathways

by Kaifuchi, N., Kita, Y., Kitano, H., Kushida, H., Matsuoka, Y., Nishi, A., Ohbuchi, K., Shimobori, C., Tokuoka, S.M, Yachie, A., Yamamoto, M.
Published 2021

Long-term behaviours of Autocatalytic Sets

by Ravoni, A.
Published 2021

Genome-scale metabolic modeling reveals SARS-CoV-2-induced metabolic changes and antiviral targets

by Chanda, S.K, Cheng, K., Martin-Sancho, L., Nair, N.U, Pal, L.R, Pu, Y., Riva, L., Ruppin, E., Sinha, S., Yin, X.
Published 2021

Comparison of metabolic states using genome-scale metabolic models

by Adriaens, M.E, Arts, I.C.W, Breuer, M., Evelo, C.T, Kutmon, M., Sarathy, C.
Published 2021

A gap-filling algorithm for prediction of metabolic interactions in microbial communities

by Giannari, D., Ho, C.H, Mahadevan, R.
Published 2021

GPRuler: Metabolic gene-protein-reaction rules automatic reconstruction

by Damiani, C., Filippo, M.D, Pescini, D.
Published 2021

Metabolic Pathway Prediction Using Non-Negative Matrix Factorization with Improved Precision

by Basher, A.R.M.A, Hallam, S.J, McLaughlin, R.J
Published 2021

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

by Acencio, M.L, Ackerman, E.E, Aghamiri, S.S, Auffray, C., Augé, F., Babur, O., Bachman, J.A, Ballereau, S., Balling, R., Barillot, E., Bauch, A., Beckmann, J.S, Bocskei, Z., Borlinghaus, H., Börnigen, D., Brauner, B., Calzone, L., Conti, M., Coort, S., Czauderna, T., De Meulder, B., de Waard, A., Demir, E., D'Eustachio, P., Dopazo, J., Dräger, A., Dugourd, A., Ehrhart, F., Eijssen, L., Esteban-Medina, M., Evelo, C.T, Fergusson, L., Fobo, G., Fraser, R., Freeman, T.C, Frishman, G., Funahashi, A., Gawron, P., Gillespie, M.E, Glaab, E., Goble, C., Golebiewski, M., Grouès, V., Gyori, B.M, Hanspers, K., Hasenauer, J., Haw, R., Heirendt, L., Helikar, T., Hermjakob, H., Hiki, Y., Hiroi, N., Hoch, M., Hu, X., Iannuccelli, M., Jassal, B., Kitano, H., Kocakaya, E., Korcsmaros, T., Kumar Gupta, S., Kuperstein, I., Kutmon, M., Licata, L., Luna, A., Maier, D., Marchesi, S., Martens, M., Matthews, L., Mazein, A., Messina, F., Modos, D., Monraz Gómez, L.C, Montagud, A., Montrone, C., Nakonecnij, V., Naldi, A., Naveez, M., Nesterova, A., Niarakis, A., Noël, V., Olbei, M., Orlic-Milacic, M., Orta-Resendiz, A., Ortseifen, V., Ostaszewski, M., Overall, R.W, Owen, S., Oxford, K., Peña-Chilet, M., Phair, R., Pham, N., Pico, A.R, Ponce de Leon, M., Porras, P., Puniya, B.L, Rameil, M., Ravel, J.-M, Renz, A., Rex, D.A.B, Rian, K., Riutta, A., Rothfels, K., Ruepp, A., Sacco, F., Saez-Rodriguez, J., Sander, C., Satagopam, V., Scheel, J., Schmiester, L., Schneider, R., Schreiber, F., Senff Ribeiro, A., Sevilla, C., Shamovsky, V., Shoemaker, J.E, Singh, V., Slenter, D., Smula, E., Soliman, S., Somers, J., Stein, L.D, Stephan, R., Summak, G.Y, Teuton, J., the COVID-19 Disease Map Community, Treveil, A., Turei, D., Valdeolivas, A., Valencia, A., Vanhoefer, J., Varusai, T., Vazquez, M., Vega, C., Wang, M., Wilighagen, E.L, Wolkenhauer, O., Wu, G., Yamada, T.G, Yuryev, A., Zucker, J.
Published 2021

GC-MS metabolomics identifies novel biomarkers to distinguish tuberculosis pleural effusion from malignant pleural effusion

by Cai, L., Chen, D., Liu, Y., Mei, B.
Published 2021