ChIP-seq 3 algorithm Algorithms 2 Chromatin Immunoprecipitation 2 Chromatin Immunoprecipitation Sequencing 2 Chromatin immunoprecipitation 2 DNA sequence 2 High-Throughput Nucleotide Sequencing 2 High-throughput sequencing 2 Histone modification 2 Histone modifications 2 Peak calling 2 Sequence Analysis, DNA 2 article 2 chromatin immunoprecipitation 2 chromatin immunoprecipitation sequencing 2 controlled study 2 high throughput sequencing 2 histone modification 2 ATAC-seq 1 Background signals 1 Bias 1 CUT&RUN 1 CUT&Tag 1 Change point detection 1 Controls 1 Epigenetics 1 Gene expression 1 GoPeaks 1 Least squares regression 1