A large-scale population based organelle pan-genomes construction and phylogeny analysis reveal the genetic diversity and the evolutionary origins of chloroplast and mitochondrion...

by Hua, W., Liu, H., Liu, J., Zhao, W.
Published 2022

DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2

by Agrafiotis, A., Azizoglu, A., Beisel, C., Burcklen, E., Chang, C.-H, Dounas, A., Ehling, R., Feldkamp, M., Gao, B., Han, J., Hong, K.-L, Nadeau, S., Neumeier, D., Nissen, I., Oxenius, A., Petrillo, E., Reddy, S.T, Rudolf, F., Savic, M., Spahr, M., Stadler, T., Valenzuela, C., Yermanos, A.
Published 2022

Deep whole-genome resequencing sheds light on the distribution and effect of amphioxus SNPs

by Chen, J.-Y, He, C., Huang, Z., Lu, N., Lu, Z., Zhu, Y.
Published 2022

Fragmented mitochondrial genomes of seal lice (family Echinophthiriidae) and gorilla louse (family Pthiridae): frequent minichromosomal splits and a host switch of lice between sea...

by Dong, Y., Shao, R., Zhao, M.
Published 2022

Efficient iterative Hi-C scaffolder based on N-best neighbors

by Durbin, R., Guan, D., McCarthy, S.A, Ning, Z., Wang, G., Wang, Y.
Published 2021

Exploring the associations between transcript levels and fluxes in constraint-based models of metabolism

by Hooiveld, G.J.E.J, Keijer, J., Martins dos Santos, V.A.P, Sinha, N., Suarez-Diez, M., van Schothorst, E.M
Published 2021

Identifying stress responsive genes using overlapping communities in co-expression networks

by Finke, J., Riccio-Rengifo, C., Rocha, C.
Published 2021

FASTAFS: file system virtualisation of random access compressed FASTA files

by Hoogstrate, Y., Jenster, G.W, Werken, H.J.G
Published 2021

isoCNV: in silico optimization of copy number variant detection from targeted or exome sequencing data

by Aiese Cigliano, R., Barcelona-Cabeza, R., Sanseverino, W.
Published 2021

RNAlign2D: a rapid method for combined RNA structure and sequence-based alignment using a pseudo-amino acid substitution matrix

by Jaruzelska, J., Sajek, M., Sajek, M.P, Woźniak, T.
Published 2021

Concatenation of paired-end reads improves taxonomic classification of amplicons for profiling microbial communities

by Chain, F.J.J, Dacey, D.P
Published 2021

A laminar augmented cascading flexible neural forest model for classification of cancer subtypes based on gene expression data

by Chen, Y., Du, L., Meng, Q., Wu, P., Zhong, L.
Published 2021

Using sound to understand protein sequence data: new sonification algorithms for protein sequences and multiple sequence alignments

by Barker, D., Martin, E.J, Meagher, T.R
Published 2021

Boolean factor graph model for biological systems: the yeast cell-cycle network

by Eslami, A., Kotiang, S.
Published 2021

DELEAT: gene essentiality prediction and deletion design for bacterial genome reduction

by Garrote-Sánchez, E., Gil, R., Solana, J.
Published 2021

Finding functional associations between prokaryotic virus orthologous groups: a proof of concept

by Dutilh, B.E, Pappas, N.
Published 2021

NOREC4DNA: using near-optimal rateless erasure codes for DNA storage

by Freisleben, B., Schwarz, P.M
Published 2021

Pre-capture multiplexing provides additional power to detect copy number variation in exome sequencing

by Berg, J.S, Bizon, C., Bost, D.M, Brandt, A.T, Filer, D.L, Jeffries, C.D, Kuo, F., Li, Y., Mieczkowski, P.A, Powell, B.C, Robasky, K., Tilley, C.R, Tilson, J.L, Wilhelmsen, K.C
Published 2021

Predicting synchronized gene coexpression patterns from fibration symmetries in gene regulatory networks in bacteria

by Ishida, C., Leifer, I., Makse, H.A, Sánchez-Pérez, M.
Published 2021

PPalign: optimal alignment of Potts models representing proteins with direct coupling information

by Coste, F., Talibart, H.
Published 2021