Modular assembly of dynamic models in systems biology

by Crampin, E.J, Cursons, J., Gawthrop, P.J, Pan, M.
Published 2021

Automating parameter selection to avoid implausible biological pathway models

by Gitter, A., Magnano, C.S
Published 2021

Genetic dissection of complex traits using hierarchical biological knowledge

by Ideker, T., Kreisberg, J.F, Tanaka, H.
Published 2021

An ensemble learning approach for modeling the systems biology of drug-induced injury

by Aguirre-Plans, J., Callegaro, G., Fernandez-Fuentes, N., Furlong, L.I, Guney, E., Kunnen, S.J, Oliva, B., Piñero, J., Sanz, F., Souza, T.
Published 2021

Boolean factor graph model for biological systems: the yeast cell-cycle network

by Eslami, A., Kotiang, S.
Published 2021

Hypergraph models of biological networks to identify genes critical to pathogenic viral response

by Baric, R.S, Bramer, L.M, Cockrell, A.S, Diamond, M.S, Eisfeld, A.J, Fan, S., Feng, S., Halfmann, P.J, Heath, E., Heller, N.C, Jefferson, B., Joslyn, C., Kawaoka, Y., Kocher, J.F, Kvinge, H., McDermott, J.E, Menachery, V.D, Mitchell, H.D, Praggastis, B., Purvine, E., Sheahan, T.P, Sims, A.C, Stratton, K.G, Tan, Q., Thackray, L.B, Walters, K.B, Waters, K.M, Westhoff-Smith, D.
Published 2021

A computational framework for modeling cell–matrix interactions in soft biological tissues

by Aydin, R.C, Cyron, C.J, Eichinger, J.F, Grill, M.J, Humphrey, J.D, Kermani, I.D, Wall, W.A
Published 2021

Frequency-preference response in covalent modification cycles under substrate sequestration conditions

by Rotstein, H.G, Szemere, J.R, Ventura, A.C
Published 2021

On Information Rank Deficiency in Phenotypic Covariance Matrices

by Meachen, J.A, O'Keefe, F.R, Polly, P.D
Published 2022

VANESA: An open-source hybrid functional Petri net modeling and simulation environment in systems biology

by Brinkrolf, C., Hofestädt, R., Ochel, L.
Published 2021

Characteristics of mathematical modeling languages that facilitate model reuse in systems biology: a software engineering perspective

by Blesius, V., Dominik, A., Ernst, G., Schölzel, C.
Published 2021

Cooperative Equilibrium in Biosphere Evolution: Reconciling Competition and Cooperation in Evolutionary Ecology

by Herring, J.
Published 2021

Evolution of dietary diversity and a starvation driven cross-diffusion system as its singular limit

by Brocchieri, E., Corrias, L., Dietert, H., Kim, Y.-J
Published 2021

The automatic parameter-exploration with a machine-learning-like approach: Powering the evolutionary modeling on the origin of life

by Liang, Y., Ma, W., Yu, C.
Published 2021

MiBiOmics: an interactive web application for multi-omics data exploration and integration

by Chaffron, S., Guillaume, J.-F, Neunlist, M., Zoppi, J.
Published 2021

ΔFBA-Predicting metabolic flux alterations using genome-scale metabolic models and differential transcriptomic data

by Gunawan, R., Ravi, S.
Published 2021

Modeling and Research on an Immuno-Epidemiological Coupled System with Coinfection

by Fu, Y.-K, Gao, S., Li, X.-Z, Martcheva, M.
Published 2021

A dynamic multi-tissue model to study human metabolism

by Martins Conde, P., Pfau, T., Pires Pacheco, M., Sauter, T.
Published 2021

Engaging biological oscillators through second messenger pathways permits emergence of a robust gastric slow-wave during peristalsis

by Ahmed, M.A, Jung, R., Venugopal, S.
Published 2021

HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks

by Bhalla, U.S
Published 2021