Deep Multi-Instance Learning Using Multi-Modal Data for Diagnosis of Lymphocytosis

by Grange, B., Jallades, L., Maurin, E., Paragios, N., Sahasrabudhe, M., Sujobert, P., Vakalopoulou, M., Zacharaki, E.I
Published 2021

Monostability and bistability of biological switches

by Guilberteau, J., Pouchol, C., Pouradier Duteil, N.
Published 2021

DR2S: an integrated algorithm providing reference-grade haplotype sequences from heterozygous samples

by Klasberg, S., Lange, V., Schmidt, A.H, Schöfl, G.
Published 2021

SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses

by Aguilar-Ordoñez, I., Barry, B.K, Burke, E.E, Collado-Torres, L., Eagles, N.J, Gutiérrez-Millán, E., Huuki, L., Jaffe, A.E, Leonard, J., Phan, B.D.N, Serrato, V.L, Stolz, J.M
Published 2021

The BioCyc Metabolic Network Explorer

by Karp, P.D, Paley, S.
Published 2021

SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints

by Chen, F., Creighton, C.J, Zhang, Y.
Published 2021

PartSeg: a tool for quantitative feature extraction from 3D microscopy images for dummies

by Basu, S., Bokota, G., Das, N., Grabowska, A., Magalska, A., Plewczynski, D., Sroka, J., Trzaskoma, P., Yushkevich, Y.
Published 2021

The information continuum model of evolution

by Mikkelsen, T.N, Skern-Mauritzen, R.
Published 2021

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

by Acencio, M.L, Ackerman, E.E, Aghamiri, S.S, Auffray, C., Augé, F., Babur, O., Bachman, J.A, Ballereau, S., Balling, R., Barillot, E., Bauch, A., Beckmann, J.S, Bocskei, Z., Borlinghaus, H., Börnigen, D., Brauner, B., Calzone, L., Conti, M., Coort, S., Czauderna, T., De Meulder, B., de Waard, A., Demir, E., D'Eustachio, P., Dopazo, J., Dräger, A., Dugourd, A., Ehrhart, F., Eijssen, L., Esteban-Medina, M., Evelo, C.T, Fergusson, L., Fobo, G., Fraser, R., Freeman, T.C, Frishman, G., Funahashi, A., Gawron, P., Gillespie, M.E, Glaab, E., Goble, C., Golebiewski, M., Grouès, V., Gyori, B.M, Hanspers, K., Hasenauer, J., Haw, R., Heirendt, L., Helikar, T., Hermjakob, H., Hiki, Y., Hiroi, N., Hoch, M., Hu, X., Iannuccelli, M., Jassal, B., Kitano, H., Kocakaya, E., Korcsmaros, T., Kumar Gupta, S., Kuperstein, I., Kutmon, M., Licata, L., Luna, A., Maier, D., Marchesi, S., Martens, M., Matthews, L., Mazein, A., Messina, F., Modos, D., Monraz Gómez, L.C, Montagud, A., Montrone, C., Nakonecnij, V., Naldi, A., Naveez, M., Nesterova, A., Niarakis, A., Noël, V., Olbei, M., Orlic-Milacic, M., Orta-Resendiz, A., Ortseifen, V., Ostaszewski, M., Overall, R.W, Owen, S., Oxford, K., Peña-Chilet, M., Phair, R., Pham, N., Pico, A.R, Ponce de Leon, M., Porras, P., Puniya, B.L, Rameil, M., Ravel, J.-M, Renz, A., Rex, D.A.B, Rian, K., Riutta, A., Rothfels, K., Ruepp, A., Sacco, F., Saez-Rodriguez, J., Sander, C., Satagopam, V., Scheel, J., Schmiester, L., Schneider, R., Schreiber, F., Senff Ribeiro, A., Sevilla, C., Shamovsky, V., Shoemaker, J.E, Singh, V., Slenter, D., Smula, E., Soliman, S., Somers, J., Stein, L.D, Stephan, R., Summak, G.Y, Teuton, J., the COVID-19 Disease Map Community, Treveil, A., Turei, D., Valdeolivas, A., Valencia, A., Vanhoefer, J., Varusai, T., Vazquez, M., Vega, C., Wang, M., Wilighagen, E.L, Wolkenhauer, O., Wu, G., Yamada, T.G, Yuryev, A., Zucker, J.
Published 2021

Using Galaxy to Perform Large-Scale Interactive Data Analyses—An Update

by Afgan, E., Blankenberg, D., Bouvier, D., Clements, D., Hillman-Jackson, J., Lariviere, D., Nekrutenko, A., Ostrovsky, A., Schatz, M.C, Taylor, J., Team, T.G
Published 2021

Mercator: A pipeline for multi-method, unsupervised visualization and distance generation

by Abrams, Z.B, Coombes, C.E, Coombes, K.R, Li, S.
Published 2021