Evidence of multiple genome duplication events in Mytilus evolution

by Bekaert, M., Carboni, S., Corrochano-Fraile, A., Davie, A.
Published 2022

DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2

by Agrafiotis, A., Azizoglu, A., Beisel, C., Burcklen, E., Chang, C.-H, Dounas, A., Ehling, R., Feldkamp, M., Gao, B., Han, J., Hong, K.-L, Nadeau, S., Neumeier, D., Nissen, I., Oxenius, A., Petrillo, E., Reddy, S.T, Rudolf, F., Savic, M., Spahr, M., Stadler, T., Valenzuela, C., Yermanos, A.
Published 2022

Deep whole-genome resequencing sheds light on the distribution and effect of amphioxus SNPs

by Chen, J.-Y, He, C., Huang, Z., Lu, N., Lu, Z., Zhu, Y.
Published 2022

Computational characterization and analysis of molecular sequence data of Elizabethkingia meningoseptica

by Girdhar, N., Krishnamachari, A., Kumari, N.
Published 2022

High-quality chromosome-scale de novo assembly of the Paspalum notatum ‘Flugge’ genome

by Chen, Y., Cong, L., Gong, Y., Liu, H., Ma, L., Miao, F., Song, H., Sun, J., Wang, A., Wang, Q., Wang, Z., Yan, Z., Yang, G., Yin, X.
Published 2022

Genomic correlation, shared loci, and causal relationship between obesity and polycystic ovary syndrome: a large-scale genome-wide cross-trait analysis

by Deng, Q., Jiang, X., Kraft, P., Liu, Q., Stener-Victorin, E., Zhu, Z.
Published 2022

High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria

by Břinda, K., Che, Y., Hanage, W., Xu, X., Yang, C., Yang, Y., Zhang, T.
Published 2022

qtlXplorer: an online systems genetics browser in the Eucalyptus Genome Integrative Explorer (EucGenIE)

by Christie, N., Delhomme, N., Mähler, N., Mannapperuma, C., Mizrachi, E., Myburg, A.A, Naidoo, S., Ployet, R., Street, N.R, van der Merwe, K.
Published 2021

Efficient iterative Hi-C scaffolder based on N-best neighbors

by Durbin, R., Guan, D., McCarthy, S.A, Ning, Z., Wang, G., Wang, Y.
Published 2021

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases

by Byrne, D.P, Eyers, P.A, Gravel, N., Huang, L.-C, Kannan, N., Taujale, R., Venkat, A., Yeung, W.
Published 2021

Finding functional associations between prokaryotic virus orthologous groups: a proof of concept

by Dutilh, B.E, Pappas, N.
Published 2021

SWnet: a deep learning model for drug response prediction from cancer genomic signatures and compound chemical structures

by Chen, X., Ge, H., Qian, D., Tian, L., Wang, P., Zuo, Z.
Published 2021

COPLA, a taxonomic classifier of plasmids

by Bartomeus-Peñalver, R., de la Cruz, F., Fernández-López, R., Redondo-Salvo, S., Tagg, K.A, Vielva, L., Webb, H.E
Published 2021

A workflow to identify novel proteins based on the direct mapping of peptide-spectrum-matches to genomic locations

by Anders, J., Haange, S.-B, Jehmlich, N., Petruschke, H., Stadler, P.F, von Bergen, M.
Published 2021

driveR: a novel method for prioritizing cancer driver genes using somatic genomics data

by Sezerman, O.U, Ülgen, E.
Published 2021

digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes

by Martínek, T., Puterová, J.
Published 2021

WEScover: selection between clinical whole exome sequencing and gene panel testing

by Alvarez, W.J, Hernandez-Ferrer, C., Kong, S.W, Lee, I.-H, Lin, Y., Mandl, K.D
Published 2021

Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes

by Demir, E., Grzadkowski, M.R, Holly, H.D, Somers, J.
Published 2021

Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data

by Baker, S.J, Frisby, T.S, Hoang, Q.M, Kingsford, C., Langmead, C.J, Marçais, G.
Published 2021

Reliable genomic strategies for species classification of plant genetic resources

by van Bemmelen van der Plaat, A., van Hintum, T.J.L, van Treuren, R.
Published 2021