adabmDCA: adaptive Boltzmann machine learning for biological sequences

by Muntoni, A.P, Pagnani, A., Weigt, M., Zamponi, F.
Published 2021

Automating parameter selection to avoid implausible biological pathway models

by Gitter, A., Magnano, C.S
Published 2021

Genetic dissection of complex traits using hierarchical biological knowledge

by Ideker, T., Kreisberg, J.F, Tanaka, H.
Published 2021

Fission stories: using PomBase to understand Schizosaccharomyces pombe biology

by Bähler, J., Harris, M.A, Hayles, J., Lock, A., Mata, J., Oliver, S.G, Rutherford, K.M, Wood, V.
Published 2022

Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits

by Azevedo, T., Dimitri, G.M, Gamazon, E.R, Lió, P.
Published 2021

A highly multiplexed quantitative phosphosite assay for biology and preclinical studies

by Babur, O., Burgess, M., Carr, S.A, Forestier, D., Gillette, M.A, Golji, J., Jane-Valbuena, J., Jean Beltran, P.M, Keshishian, H., Krug, K., Kuhn, E., MacMullan, M.A, Mani, D.R, Marlow, S.E, McDonald, E.R., III, Melanson, R., Mundt, F., Olive, M.E, Porter, D.A, Rabasha, B., Rejtar, T., Robinson, M.L, Satpathy, S., Sellers, W.R, Specht, H., Todres, E., Wallace, L., Wang, K.
Published 2021

Boolean factor graph model for biological systems: the yeast cell-cycle network

by Eslami, A., Kotiang, S.
Published 2021

Data-driven biological network alignment that uses topological, sequence, and functional information

by Gu, S., Milenković, T.
Published 2021

Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation

by Milenkovic, T., Newaz, K.
Published 2022

Redefining schizophrenia through genetics: A commentary on 50 years searching for biological causes

by DeLisi, L.E
Published 2022

An iteration model for identifying essential proteins by combining comprehensive PPI network with biological information

by Chen, Z., Li, S., Li, X., Tan, Y., Wang, L., Zhang, Z.
Published 2021

A new algorithm to train hidden Markov models for biological sequences with partial labels

by Lee, J.-Y, Li, J., Liao, L.
Published 2021

A systems biology model of junctional localization and downstream signaling of the Ang–Tie signaling pathway

by Annex, B.H, Kontos, C.D, Popel, A.S, Zhang, Y.
Published 2021

OmicLoupe: facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons

by Levander, F., Siino, V., Willforss, J.
Published 2021

Acromelic dysplasias: how rare musculoskeletal disorders reveal biological functions of extracellular matrix proteins

by Balic, Z., Hubmacher, D., Stanley, S.
Published 2021

MethylSPWNet and MethylCapsNet: Biologically Motivated Organization of DNAm Neural Networks, Inspired by Capsule Networks

by Azizgolshani, N., Chen, Y., Christensen, B.C, Levy, J.J, Moen, E.L, Petersen, C.L, Salas, L.A, Titus, A.J, Vaickus, L.J
Published 2021

Investigating the relevance of major signaling pathways in cancer survival using a biologically meaningful deep learning model

by Feng, J., Li, F., Zhang, H.
Published 2021

Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species

by Braisted, J., Breen, M., Gerhold, D., Grewal, G., LeBlanc, A.K, Mazcko, C., Sittampalam, G., Tawa, G.J
Published 2021

A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC

by Bennett, J., Peters, B., Pomaznoy, M., Singhania, A.
Published 2021

A dynamic multi-tissue model to study human metabolism

by Martins Conde, P., Pfau, T., Pires Pacheco, M., Sauter, T.
Published 2021