MegaR: an interactive R package for rapid sample classification and phenotype prediction using metagenome profiles and machine learning

by Ahn, T.-H, Dhungel, E., Gwak, H.-J, Mreyoud, Y., Rajeh, A., Rho, M.
Published 2021

Accucopy: accurate and fast inference of allele-specific copy number alterations from low-coverage low-purity tumor sequencing data

by Fan, X., Huang, Y.S, Luo, G.
Published 2021

Drug perturbation gene set enrichment analysis (dpGSEA): a new transcriptomic drug screening approach

by Cameron, C.M, Cameron, M.J, Dazard, J.-E, Fang, M., Richardson, B.
Published 2021

Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites

by Eisenhaber, B., Eisenhaber, F., Jadalanki, C.K, Shitov, V.A, Sinha, S., Sirota, F.L, Tan, Q.W
Published 2021

Set-theory based benchmarking of three different variant callers for targeted sequencing

by Molina-Mora, J.A, Solano-Vargas, M.
Published 2021

Modeling drug mechanism of action with large scale gene-expression profiles using GPAR, an artificial intelligence platform

by Gao, S., Han, L., Liu, G., Luo, D., Shan, G., Xiao, Z., Zhang, Y., Zhou, W.
Published 2021

H2V: a database of human genes and proteins that respond to SARS-CoV-2, SARS-CoV, and MERS-CoV infection

by Bao, J., Ning, Y., Zhou, N.
Published 2021

Identifying the sequence specificities of circRNA-binding proteins based on a capsule network architecture

by Lei, X., Wang, Z.
Published 2021

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

by Conrad, R.E, Konstantinidis, K.T, Ruiz-Perez, C.A
Published 2021

HapSolo: an optimization approach for removing secondary haplotigs during diploid genome assembly and scaffolding

by Gaut, B.S, Long, A.D, Solares, E.A, Tao, Y.
Published 2021

mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes

by Planz, J., Song, B., Woerner, A.E
Published 2021

SCC: an accurate imputation method for scRNA-seq dropouts based on a mixture model

by Hu, J., Shang, X., Zheng, Y., Zhong, Y.
Published 2021

PCirc: random forest-based plant circRNA identification software

by Li, G., Sun, P., Tian, X., Yin, S., Zhang, J.
Published 2021

A learning-based method to predict LncRNA-disease associations by combining CNN and ELM

by Chen, Z.-H, Guo, Z.-H, Wang, M.-N, Wang, Y.-B, Yi, H.-C, You, Z.-H
Published 2021

Beware to ignore the rare: how imputing zero-values can improve the quality of 16S rRNA gene studies results

by Baruzzo, G., Di Camillo, B., Patuzzi, I.
Published 2021

In silico design of recombinant multi-epitope vaccine against influenza A virus

by Maleki, A., Pappalardo, F., Parasiliti Palumbo, G.A, Russo, G.
Published 2021

Whole genome sequencing and the application of a SNP panel reveal primary evolutionary lineages and genomic variation in the lion (Panthera leo)

by Bauer, H., Bertola, L.D, Chege, M., de Iongh, H.H, Laros, J.F.J, Lesilau, F., Patterson, B.D, Schaap, O.D, Sogbohossou, E.A, Tumenta, P.N, Vermaat, M., Vrieling, K., White, P.A
Published 2022

Enhanced serodiagnosis of melioidosis by indirect ELISA using the chimeric protein rGroEL-FLAG300 as an antigen

by Kritsiriwuthinan, K., Taylor, W.R.J, Wajanarogana, S.
Published 2022

BreakAlign: a Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations

by Belshaw, R., Frater, J., Jones, M., Klenerman, P., Magiorkinis, G., Marchi, E.
Published 2022

Genomic variation in baboons from central Mozambique unveils complex evolutionary relationships with other Papio species

by Aldeias, V., Archer, W., Bamford, M., Bertolini, F., Biro, D., Bobe, R., Braun, D.R, Caldon, M., Capelli, C., Carvalho, S., Ferreira da Silva, M.J, Hammond, P., Lüdecke, T., Martínez, F.I, Mathe, J., Meira Paulo, L., Molinaro, L., Moltke, I., Mutti, G., Oteo-Garcia, G., Pagani, L., Pinto, M.J, Raveane, A., Regala, F.T, Santander, C., Stalmans, M.
Published 2022