A globally diverse reference alignment and panel for imputation of mitochondrial DNA variants

by Andrews, S.J, Easteal, S., for the Alzheimer's Disease Neuroimaging Initiative, Fulton-Howard, B., Goate, A., Jermiin, L.S, McInerney, T.W, Pa, J., Paliwal, D., Patel, H.R, Patterson, C., Swerdlow, R.H
Published 2021

Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters

by Almaas, E., Fossheim, F.A, Sulheim, S., Wentzel, A.
Published 2021

Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers

by Acemel, R.D, Bessa, J., Bordeira-Carriço, R., Carneiro, F., Duque, M., Eufrásio, A., Ferreira, F.J, Firbas, P.N, Freitas, T., Galhardo, M., Goméz-Skarmeta, J.L, Marques, J., Ribeiro, D., Teixeira, J., Tena, J.J
Published 2022

Multidimensional chromatin profiling of zebrafish pancreas to uncover and investigate disease-relevant enhancers

by Acemel, R.D, Bessa, J., Bordeira-Carriço, R., Carneiro, F., Duque, M., Eufrásio, A., Ferreira, F.J, Firbas, P.N, Freitas, T., Galhardo, M., Goméz-Skarmeta, J.L, Marques, J., Ribeiro, D., Teixeira, J., Tena, J.J
Published 2022

Protection of nascent DNA at stalled replication forks is mediated by phosphorylation of RIF1 intrinsically disordered region

by Andrade, J.G, Andreani, M., Balasubramanian, S., Chait, B.T, Di Virgilio, M., Donaldson, A.D, Garzón, J., Hiraga, S.-I, Mertins, P., Popp, O., Rahjouei, A., Rosen, D.B, Saha, T., Sundaravinayagam, D., Zhang, W.
Published 2022

The Oncogenic PI3K-Induced Transcriptomic Landscape Reveals Key Functions in Splicing and Gene Expression Regulation

by Abdel-Wahab, O., Arruabarrena-Aristorena, A., Baldino, L., Blawski, R., Carmona, J., Castel, P., Chandarlapaty, S., Cocco, E., Fairchild, L., Hristidis, V., Jhaveri, K., Kittane, S., Ladewig, E., Leslie, C., Michelini, F., Sallaku, M., Scaltriti, M., Toska, E., Zhang, Y., Zuniga, A.G
Published 2022

CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training

by Chen, Y., Chiu, Y.-C, Huang, Y., Mostavi, M.
Published 2021

Reanalysis of eMERGE phase III sequence variants in 10,500 participants and infrastructure to support the automated return of knowledge updates

by Harley, J.B, Hawley, M., Jarvik, G.P, Karlson, E.W, Koch, C., Lebo, M.S, Leppig, K.A, Mahanta, L.M, Myers, M.F, Oza, A., Prows, C.A, Rehm, H.L, Vijay Kumar, P.K, Weiss, S.T, Williams, M.S, Yu, W., Zouk, H.
Published 2022

The genetic history of Mayotte and Madagascar cattle breeds mirrors the complex pattern of human exchanges in Western Indian Ocean

by Druet, T., Flori, L., Gautier, M., Janelle, J., Lesnoff, M., Magnier, J., Moazami-Goudarzi, K., Naves, M., Ouvrard, M., Raoul, S., Tillard, E.
Published 2022

IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences

by Alamro, H., Alzamel, M., Iliopoulos, C.S, Pissis, S.P, Watts, S.
Published 2021

Genetic analysis of over half a million people characterises C-reactive protein loci

by Alizadeh, B.Z, Bodinier, B., Chadeau-Hyam, M., Chasman, D.I, Dehghan, A., Elliott, P., Evangelou, E., Jarvelin, M.-R, Karhunen, V., Koskeridis, F., Ligthart, S., Pazoki, R., Said, S., Sattar, N., Tzoulaki, I., Võsa, U., Welsh, P.
Published 2022

lncEvo: automated identification and conservation study of long noncoding RNAs

by Bryzghalov, O., Makałowska, I., Szcześniak, M.W
Published 2021

mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes

by Planz, J., Song, B., Woerner, A.E
Published 2021

Multilocus sequence typing analysis and second-generation sequencing analysis of Salmonella Wandsworth

by Lu, Y., Wang, Y., Xu, X., Zhang, C.
Published 2021

SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data

by Müller, B., Pettitt, J., Wenzel, M.A
Published 2021

NIA Long Life Family Study: Objectives, Design, and Heritability of Cross-Sectional and Longitudinal Phenotypes

by Christensen, K., Jiuan Lin, S., Kulminski, A., Lee, J., Newman, A., Perls, T.T, Province, M.A, Sebastiani, P., Wojczynski, M.K, Zmuda, J.M
Published 2022

Generating CRISPR-Cas9-Mediated Null Mutations and Screening Targeting Efficiency in Human Pluripotent Stem Cells

by Alanis-Lobato, G., Bower, O.J, Gerri, C., Lea, R.A, McCarthy, A., Niakan, K.K, Turner, J.M.A, Zohren, J.
Published 2021

Multiple factors are involved in regulation of extracellular membrane vesicle biogenesis in Streptococcus mutans

by Chapman, L., Ellepola, K., Huang, X., Jeannine Brady, L., Jorgensen, A.N, Wen, Z.T, Wu, H.
Published 2021

Single-Cell RNA Sequencing Analysis of the Drosophila Larval Ventral Cord

by Brody, T., Choudhury, S.D, Coon, S.L, Iben, J., Nguyen, T.H, Serpe, M., Vicidomini, R.
Published 2021

Type 2 Diabetes Partitioned Polygenic Scores Associate With Disease Outcomes in 454,193 Individuals Across 13 Cohorts

by Ahmadizar, F., Bielak, L.F, Blokstra, A., Boerwinkle, E., Bottinger, E.P, Chaker, L., Chen, Y., Chen, Y.-D.I, Cole, J.B, de Vries, P.S, DiCorpo, D., Dupuis, J., Faquih, T., Florez, J.C, Ghanbari, M., Goodarzi, M.O, Gudmundsdottir, V., Gudnason, V., Guo, X., Hasbani, N.R, Ibi, D., Ikram, M.A, Jukema, J.W, Kardia, S.L.R, Kavousi, M., LeClair, J., Leonard, H.L, Leong, A., Liu, C.-T, Loos, R.J.F, Manning, A.K, Meigs, J.B, Mercader, J.M, Mook-Kanamori, D., Morrison, A.C, Nadkarni, G.N, Nalls, M.A, Noordam, R., Pankow, J.S, Picavet, H.S.J, Preuss, M., Rotter, J.I, Sarnowski, C., Sattar, N., Simonsick, E.M, Smith, J.A, Trompet, S., Udler, M.S, Verschuren, W.M.M, Vissink, P., Willems van Dijk, K., Yao, J., Zhao, W.
Published 2022