WormBase in 2022-data, processes, and tools for analyzing Caenorhabditis elegans

by Arnaboldi, V., Becerra, A., Berriman, M., Cain, S., Chan, J., Chen, W.J, Cho, J., da Veiga Beltrame, E., Davis, P., Diamantakis, S., Gao, S., Grigoriadis, D., Grove, C.A, Harris, T.W, Howe, K.L, Kishore, R., Le, T., Lee, R.Y.N, Luypaert, M., Müller, H.-M, Nakamura, C., Nuin, P., Paulini, M., Quinton-Tulloch, M., Raciti, D., Rodgers, F.H, Russell, M., Schedl, T., Schindelman, G., Singh, A., Stein, L., Sternberg, P.W, Stickland, T., Van Auken, K., Wang, Q., Williams, G., Wright, A.J, Yook, K., Zarowiecki, M.
Published 2022

Harmonizing model organism data in the Alliance of Genome Resources

by Alliance of Genome Resources Consortium
Published 2022

MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses

by Brodie, K., De Pons, J.L, Demos, W.M, Dwinell, M.R, Gibson, A.C, Hayman, G.T, Hill, M.L, Hoffman, M.J, Kaldunski, M.L, Kwitek, A.E, Lamers, L., Laulederkind, S.J.F, Lin, C.-W, Nalabolu, H.S, Smith, J.R, Thorat, K., Thota, J., Tutaj, M., Tutaj, M.A, Vedi, M., Wang, S.-J, Zacher, S.
Published 2022

JaponicusDB: rapid deployment of a model organism database for an emerging model species

by Harris, M.A, Oliferenko, S., Rutherford, K.M, Wood, V.
Published 2022

Whole-genome comparative analysis reveals genetic mechanisms of disease resistance and heat tolerance of tropical Bos indicus cattle breeds

by Bakyaraj, S., Jagadeesan, K., Mishra, A., Singaravadivelan, A., Sivakumar, T., Suresh, R., Vijayakumar, P.
Published 2022

Comparison of the frequencies of ENU-induced point mutations in male germ cells and inherited germline mutations in their offspring

by Ando, T., Honma, M., Masumura, K., Nohmi, T., Toyoda-Hokaiwado, N., Ukai, A.
Published 2021

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate l...

by Barry, K., Brown, J.L, Drula, E., Grigoriev, I.V, He, G., Henrissat, B., Henske, J.K, LaButti, K., Lee, S., Mondo, S.J, O’Malley, M.A, Salamov, A., Seppala, S., Singan, V., Swift, C.L, Yan, M.
Published 2021

Development and characterization of efficient xylose utilization strains of Zymomonas mobilis

by Du, J., He, Q., Hu, M., Li, M., Li, R., Lou, J., Wang, J., Wang, X., Yang, Q., Yang, S., Yang, Y.
Published 2021

Genome-wide association study and transcriptome analysis dissect the genetic control of silique length in Brassica napus L.

by Fan, Y., Li, J., Liu, L., Lu, K., Mao, L., Qu, C., Wang, J.
Published 2021

Massive QTL analysis identifies pleiotropic genetic determinants for stress resistance, aroma formation, and ethanol, glycerol and isobutanol production in Saccharomyces cerevisiae

by Cortebeeck, J., Del Cortona, A., Gallone, B., Herrera, B., Ho, P.-W, Jarosz, D.F, Nolmans, R., Peeters, P.-J, Piampongsant, S., Reijbroek, F., Saels, V., Steensels, J., Verbaet, J., Verstrepen, K.J
Published 2021

Endogenous CRISPR-assisted microhomology-mediated end joining enables rapid genome editing in Zymomonas mobilis

by He, M., Hu, G., Liu, T., Peng, N., Sui, X., Wang, X., Wu, B., Yang, S., Ye, Q.
Published 2021

The Brassica napus fatty acid exporter FAX1-1 contributes to biological yield, seed oil content, and oil quality

by Guo, L., Guo, T., Huo, Q., Li, J., Li, N., Li, Q., Li, S., Lu, K., Qu, C., Tang, F., Wang, D., Wang, S., Wei, L., Xiao, Z., Yang, B., Zhang, C., Zhang, L., Zhang, Y.
Published 2021

SorGSD: updating and expanding the sorghum genome science database with new contents and tools

by Hao, H., Jing, H.-C, Li, C., Liu, Y., Luo, H., Luo, J., Tian, D., Wang, Z., Wu, X., Zhao, W., Zhu, J.
Published 2021

Stress tolerance enhancement via SPT15 base editing in Saccharomyces cerevisiae

by Guo, Y., Lin, Y., Liu, Y., Qi, X., Wang, Q., Wang, Z., Wu, F., Zhang, Y.
Published 2021

CAZyme prediction in ascomycetous yeast genomes guides discovery of novel xylanolytic species with diverse capacities for hemicellulose hydrolysis

by Engqvist, M.K.M, Geijer, C., Larsbrink, J., Ravn, J.L
Published 2021

A metabolic model of Lipomyces starkeyi for predicting lipogenesis potential from diverse low-cost substrates

by Gong, Z., Tang, M., Wang, Y., Zhang, J., Zhao, M., Zhou, W., Zhou, W.
Published 2021

Genomic and transcriptomic analysis of the thermophilic lignocellulose-degrading fungus Thielavia terrestris LPH172

by Hüttner, S., Larsbrink, J., Olsson, L., Rugbjerg, P., Thanh, V.N, Thuy, N.T, Tõlgo, M.
Published 2021

From simple and specific zymographic detections to the annotation of a fungus Daldinia caldariorum D263 that encodes a wide range of highly bioactive cellulolytic enzymes

by Ho, T.-H.D, Hung, K.-S, Kao, M.-R, Kuo, H.-W, Li, C.-W, Lin, M.-C, Lin, W.-D, Yang, S.-C, Yu, S.-M
Published 2021

Zymomonas diversity and potential for biofuel production

by Bowers, R.M, Felczak, M.M, TerAvest, M.A, Woyke, T.
Published 2021

Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600

by Araújo, M.F, Damasio, A., de Carvalho Silvello, M.A, de Figueiredo, F.L, de Oliveira, A.C.P, Franco, T.T, Gerhardt, J.A, Goldbeck, R., Gonçalves, T.A, Peña, J.A.T, Persinoti, G.F, Rabelo, S.C, Rubio, M.V, Squina, F.M, Terrasan, C.R.F, Tomazetto, G.
Published 2021