DeepCellState: An autoencoder-based framework for predicting cell type specific transcriptional states induced by drug treatment

by Arner, E., Li, Y., Umarov, R.
Published 2021

Efficiently generate functional hepatic cells from human pluripotent stem cells by complete small-molecule strategy

by Chen, Y., Fang, J., Gao, Y., Li, S., Li, Y., Li, Y.-X, Liang, K., Lin, X., Pan, T., Wang, N., Xu, Y., Yang, F., You, K., Zhang, J., Zhuang, Y.
Published 2022

Cell morphology-based machine learning models for human cell state classification

by Bleris, L., Li, Y., Nguyen, K., Nowak, C.M, Pham, U.
Published 2021

Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

by Chen, J., Harigaya, Y., Hu, M., Lagler, T.M, Li, Y., Raffield, L.M, Reiner, A.P, Sankaran, V.G, Sun, Q., Wen, J., Yang, Y.
Published 2022

MALT1 positively correlates with Th1 cells, Th17 cells, and their secreted cytokines and also...

by Chen, X., Huang, S., Lan, L., Li, Y., Xu, G., Zhang, X.
Published 2021

CDSeqR: fast complete deconvolution for gene expression data from bulk tissues

by Huang, C., Kang, K., Li, L., Li, Y., Umbach, D.M
Published 2021

Hybrid computational modeling demonstrates the utility of simulating complex cellular networks in type 1 diabetes

by Jaberi-Douraki, M., Li, Y., Shi, Z.
Published 2021

Long non-coding RNA SPRY4-IT1 promotes proliferation and metastasis in nasopharyngeal carcinoma cell

by Chen, L., Deng, S., Feng, S., Li, Y., Liang, Z., Liao, Z., Lin, Z., Liu, Z., Wang, R.
Published 2022

ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation

by Arakawa, T., Arner, E., Gao, X., Li, Y., Takizawa, S., Umarov, R.
Published 2021

Deep Learning Methods for Lung Cancer Segmentation in Whole-Slide Histopathology Images - The ACDC@LungHP Challenge 2019

by Chen, H., Chen, Y.-C, Hong, Y., Jiang, Y., Jung, H., Khanagha, V., Ko, J., Lee, B., Li, D., Li, N., Li, Y., Li, Z., Litjens, G., Liu, L., Liu, Y., Liu, Z., Maevskikh, P., Schuffler, P.J, Sun, S., Sun, X., Tan, T., Tang, Y., Teng, X., Wang, C.-W, Xiao, Y., Yan, J., Yu, L., Yu, Q., Yurovskiy, V., Zhang, J., Zhang, Q., Zhao, H., Zheng, Y.
Published 2021

Gut flora-targeted photobiomodulation therapy improves senile dementia in an Aß-induced Alzheimer's disease animal model

by Che, B., Chen, Q., Dong, X., Li, Y., Shi, X., Su, S., Wu, J., Yang, J., Yin, H.
Published 2021