Super interactive promoters provide insight into cell type-specific regulatory networks in blood lineage cell types

by Chen, J., Harigaya, Y., Hu, M., Lagler, T.M, Li, Y., Raffield, L.M, Reiner, A.P, Sankaran, V.G, Sun, Q., Wen, J., Yang, Y.
Published 2022

Experiment level curation of transcriptional regulatory interactions in neurodevelopment

by Chang, T.H.C, Chu, E.C.-P, Liu, C.C, Morin, A., Nguyen, T., Pavlidis, P., Sharma, A., Tsai, Y.-C
Published 2021

Regulation of transcription reactivation dynamics exiting mitosis

by Molina, N., Riba, A., Sarnataro, S.
Published 2021

A metric for evaluating biological information in gene sets and its application to identify co-expressed gene clusters in PBMC

by Bennett, J., Peters, B., Pomaznoy, M., Singhania, A.
Published 2021

Comprehensive analysis of lectin-glycan interactions reveals determinants of lectin specificity

by Bailey-Kellogg, C., Mattox, D.E
Published 2021

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs

by Bonnici, V., Garrison, E., Giugno, R., Pinello, L., Tognon, M.
Published 2021

Crowdsourced identification of multi-target kinase inhibitors for RET- And TAU- based disease- And Multi-Targeting Drug DREAM Challenge

by Abagyan, R., Allaway, R.J, Cagan, R., Carlson, H.A, Dang, K.K, Das, T.K, Guinney, J., Guo, X., Hecht, C., Jeon, H., Jeon, M., Jiang, H., Kang, J., Ko, M., Lee, J., Park, D., Schlessinger, A., Tan, A.C, Tropsha, A., Xiong, Z., Zheng, M.
Published 2021

Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2

by Ahmad, M., Bhattacharyya, S., Biswal, B.K, Chakraborty, S., Dwivedy, A., Jeyakanthan, J., Kar, D., Majumdar, T., Mani, S., Mariadasse, R., Sonar, S., Tailor, P., Tiwari, S.
Published 2021

Protein structural features predict responsiveness to pharmacological chaperone treatment for three lysosomal storage disorders

by Woodard, J., Zhang, Y., Zheng, W.
Published 2021

Dynamic modelling of the PI3K/MTOR signalling network uncovers biphasic dependence of mTORC1 activity on the mTORC2 subunit SIN1

by Ghomlaghi, M., James, D.E, Nguyen, L.K, Shin, S., Yang, G.
Published 2021

Structural and energetic profiling of SARS-CoV-2 receptor binding domain antibody recognition and the impact of circulating variants

by Gowthaman, R., Guest, J.D, Mittra, I., Pierce, B.G, Quackenbush, J., Taherzadeh, G., Yin, R.
Published 2021

FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks

by Besozzi, D., Capitoli, G., Cazzaniga, P., Mauri, G., Nobile, M.S, Rundo, L., Spolaor, S., Tangherloni, A.
Published 2021

Differential contribution to gene expression prediction of histone modifications at enhancers or promoters

by Ballaré, C., Beringer, M., Blanco, E., Di Croce, L., González-Ramírez, M., Mugianesi, F., Santanach, A.
Published 2021