Large-Scale Profiling of RBP-circRNA Interactions from Public CLIP-Seq Datasets

by Minzhe Zhang, Tao Wang, Guanghua Xiao, Yang Xie
Published 2020-01-01

PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data

by Sabrina Krakau, Hugues Richard, Annalisa Marsico
Published 2017-12-01

Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequen...

by Kotaro Chihara, Thorsten Bischler, Lars Barquist, Vivian A. Monzon, Naohiro Noda, Jörg Vogel, Satoshi Tsuneda
Published 2019-12-01

Prediction of functional microRNA targets by integrative modeling of microRNA binding and target expression data

by Weijun Liu, Xiaowei Wang
Published 2019-01-01

Etude des mécanismes de reconnaissance du transcrit dans la terminaison de la transcription Rho-dépendante

by Nadiras, Cédric
Published 2018

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

by Eric L. Van Nostrand, Gabriel A. Pratt, Brian A. Yee, Emily C. Wheeler, Steven M. Blue, Jasmine Mueller, Samuel S. Park, Keri E. Garcia, Chelsea Gelboin-Burkhart, Thai B. Nguyen, Ines Rabano, Rebecca Stanton, Balaji Sundararaman, Ruth Wang, Xiang-Dong Fu, Brenton R. Graveley, Gene W. Yeo
Published 2020-04-01

Improving CLIP-seq data analysis by incorporating transcript information

by Michael Uhl, Van Dinh Tran, Rolf Backofen
Published 2020-12-01

Identification of high-confidence RNA regulatory elements by combinatorial classification of RNA–protein binding sites

by Yang Eric Li, Mu Xiao, Binbin Shi, Yu-Cheng T. Yang, Dong Wang, Fei Wang, Marco Marcia, Zhi John Lu
Published 2017-09-01

Integration of CLIP experiments of RNA-binding proteins: a novel approach to predict context-dependent splicing factors from transcriptomic data

by Fernando Carazo, Marian Gimeno, Juan A. Ferrer-Bonsoms, Angel Rubio
Published 2019-06-01

Identification of CELF1 RNA targets by CLIP-seq in human HeLa cells

by Olivier Le Tonquèze, Bernhard Gschloessl, Vincent Legagneux, Luc Paillard, Yann Audic
Published 2016-06-01

Discovery of protein-lncRNA interactions by integrating large-scale CLIP-Seq and RNA-Seq datasets

by Jun-Hao eLi, Shun eLiu, Ling-Ling eZheng, Jie eWu, Wen-Ju eSun, Ze-Lin eWang, Hui eZhou, Liang-Hu eQu, Jian-Hua eYang
Published 2015-01-01

omniCLIP: probabilistic identification of protein-RNA interactions from CLIP-seq data

by Philipp Drewe-Boss, Hans-Hermann Wessels, Uwe Ohler
Published 2018-11-01

SURF: integrative analysis of a compendium of RNA-seq and CLIP-seq datasets highlights complex governing of alternative transcriptional regulation by RNA-binding proteins

by Fan Chen, Sündüz Keleş
Published 2020-06-01

Human protein-RNA interaction network is highly stable across mammals

by Aarthi Ramakrishnan, Sarath Chandra Janga
Published 2019-12-01

The Human CCHC-type Zinc Finger Nucleic Acid-Binding Protein Binds G-Rich Elements in Target mRNA Coding Sequences and Promotes Translation

by Daniel Benhalevy, Sanjay K. Gupta, Charles H. Danan, Suman Ghosal, Hong-Wei Sun, Hinke G. Kazemier, Katrin Paeschke, Markus Hafner, Stefan A. Juranek
Published 2017-03-01

The <i>Drosophila</i> RNA Helicase Belle (DDX3) Non-Autonomously Suppresses Germline Tumorigenesis Via Regulation of a Specific mRNA Set

by Alexei A. Kotov, Baira K. Godneeva, Oxana M. Olenkina, Vladimir E. Adashev, Mikhail V. Trostnikov, Ludmila V. Olenina
Published 2020-02-01

Functional study of miRNA-mRNA interactions in malaria mosquito An. gambiae

by Fu, Xiaonan
Published 2019

The Dynamic Fate of the Exon Junction Complex

by Patton, Robert Dennison
Published 2020