High-quality chromosome-scale de novo assembly of the Paspalum notatum ‘Flugge’ genome

by Chen, Y., Cong, L., Gong, Y., Liu, H., Ma, L., Miao, F., Song, H., Sun, J., Wang, A., Wang, Q., Wang, Z., Yan, Z., Yang, G., Yin, X.
Published 2022

GenoVault: a cloud based genomics repository

by Bhadhadhara, K., Bharti, N., Hesarur, S., Jain, S., Joshi, R., Kasibhatla, S.M, Saxena, A., Sonavane, U.
Published 2021

NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology

by Cmil, M., Czmil, A., Czmil, S., Gawor, J., Pietal, M., Plewczynski, D., Sochacka-Pietal, M., Strzalka, D., Wołkowicz, T., Wronski, M.
Published 2022

qc3C: Reference-free quality control for Hi-C sequencing data

by Darling, A.E, DeMaere, M.Z
Published 2021

DeepSARS: simultaneous diagnostic detection and genomic surveillance of SARS-CoV-2

by Agrafiotis, A., Azizoglu, A., Beisel, C., Burcklen, E., Chang, C.-H, Dounas, A., Ehling, R., Feldkamp, M., Gao, B., Han, J., Hong, K.-L, Nadeau, S., Neumeier, D., Nissen, I., Oxenius, A., Petrillo, E., Reddy, S.T, Rudolf, F., Savic, M., Spahr, M., Stadler, T., Valenzuela, C., Yermanos, A.
Published 2022

Efficient iterative Hi-C scaffolder based on N-best neighbors

by Durbin, R., Guan, D., McCarthy, S.A, Ning, Z., Wang, G., Wang, Y.
Published 2021

Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms

by Derzelle, A., Flot, J.-F, Guiglielmoni, N., Houtain, A., Van Doninck, K.
Published 2021

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

by Conrad, R.E, Konstantinidis, K.T, Ruiz-Perez, C.A
Published 2021

2-kupl: mapping-free variant detection from DNA-seq data of matched samples

by Du, Y., Gautheret, D., Pourcel, C., Wang, Y., Xue, H.
Published 2021

LongStitch: high-quality genome assembly correction and scaffolding using long reads

by Birol, I., Coombe, L., Li, J.X, Lo, T., Nikolic, V., Warren, R.L, Wong, J.
Published 2021

SAUTE: sequence assembly using target enrichment

by Agarwala, R., Souvorov, A.
Published 2021

SLR-superscaffolder: a de novo scaffolding tool for synthetic long reads using a top-to-bottom scheme

by Chen, F., Deng, L., Fan, G., Gu, S., Guo, L., Liu, X., Seim, I., Wang, O., Wang, W., Xu, M., Xu, X., Zhao, X.
Published 2021

Liquid Biopsy, Diagnostic Imaging, and Future Synergies

by Digumarthy, S.R, Gainor, J.F, Pandharipande, P.V, Petranovic, M., Raoof, S., Sharma, A., Shepard, J.-A.O
Published 2022

WEScover: selection between clinical whole exome sequencing and gene panel testing

by Alvarez, W.J, Hernandez-Ferrer, C., Kong, S.W, Lee, I.-H, Lin, Y., Mandl, K.D
Published 2021

Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation

by Cao, S., Cui, Z., Guo, H., Jiang, T., Liu, S., Liu, Y., Wang, Y.
Published 2021

SamQL: a structured query language and filtering tool for the SAM/BAM file format

by Lee, C.T, Maragkakis, M.
Published 2021

trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios

by Miller, D.B, Piccolo, S.R
Published 2021

recoup: flexible and versatile signal visualization from next generation sequencing

by Moulos, P.
Published 2021

HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes

by Farrer, R.A
Published 2021

Improving structural variant clustering to reduce the negative effect of the breakpoint uncertainty problem

by Geryk, J., Korabecna, M., Simková, H., Stenzl, V., Zedníková, I., Zinkova, A.
Published 2021