BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine

by Olga Majewska, Charlotte Collins, Simon Baker, Jari Björne, Susan Windisch Brown, Anna Korhonen, Martha Palmer
Published 2021-07-01

The Infectious Disease Ontology in the age of COVID-19

by Shane Babcock, John Beverley, Lindsay G. Cowell, Barry Smith
Published 2021-07-01

Synthetic data for annotation and extraction of family history information from clinical text

by Pål H. Brekke, Taraka Rama, Ildikó Pilán, Øystein Nytrø, Lilja Øvrelid
Published 2021-07-01

ResidueFinder: extracting individual residue mentions from protein literature

by Ton E Becker, Eric Jakobsson
Published 2021-07-01

Syntax-based transfer learning for the task of biomedical relation extraction

by Joël Legrand, Yannick Toussaint, Chedy Raïssi, Adrien Coulet
Published 2021-08-01

Toward a systematic conflict resolution framework for ontologies

by C. Maria Keet, Rolf Grütter
Published 2021-08-01

InContext: curation of medical context for drug indications

by Kody Moodley, Linda Rieswijk, Tudor I. Oprea, Michel Dumontier
Published 2021-02-01

Multimodal temporal-clinical note network for mortality prediction

by Haiyang Yang, Li Kuang, FengQiang Xia
Published 2021-02-01

Combining lexical and context features for automatic ontology extension

by Sara Althubaiti, Şenay Kafkas, Marwa Abdelhakim, Robert Hoehndorf
Published 2020-01-01

Text mining brain imaging reports

by Beatrice Alex, Claire Grover, Richard Tobin, Cathie Sudlow, Grant Mair, William Whiteley
Published 2019-11-01

Combining string and phonetic similarity matching to identify misspelt names of drugs in medical records written in Portuguese

by Hegler Tissot, Richard Dobson
Published 2019-11-01

KLOSURE: Closing in on open–ended patient questionnaires with text mining

by Irena Spasić, David Owen, Andrew Smith, Kate Button
Published 2019-11-01

Ontology patterns for the representation of quality changes of cells in time

by Patryk Burek, Nico Scherf, Heinrich Herre
Published 2019-10-01

Identifying disease trajectories with predicate information from a knowledge graph

by Wytze J. Vlietstra, Rein Vos, Marjan van den Akker, Erik M. van Mulligen, Jan A. Kors
Published 2020-08-01

Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology

by William D. Duncan, Thankam Thyvalikakath, Melissa Haendel, Carlo Torniai, Pedro Hernandez, Mei Song, Amit Acharya, Daniel J. Caplan, Titus Schleyer, Alan Ruttenberg
Published 2020-08-01

Predicting instances of pathway ontology classes for pathway integration

by Lucy Lu Wang, G. Thomas Hayman, Jennifer R. Smith, Monika Tutaj, Mary E. Shimoyama, John H. Gennari
Published 2019-06-01

Seeing the whole picture: integrated pre-surgery reports with PreOptique

by Guillermo Vega-Gorgojo, Laura Slaughter, Martin Giese
Published 2019-03-01

Neural side effect discovery from user credibility and experience-assessed online health discussions

by Van-Hoang Nguyen, Kazunari Sugiyama, Min-Yen Kan, Kishaloy Halder
Published 2020-07-01

CAS: corpus of clinical cases in French

by Natalia Grabar, Clément Dalloux, Vincent Claveau
Published 2020-08-01

Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung

by Huaqin Pan, Gail H. Deutsch, Susan E. Wert, On behalf of the Ontology Subcommittee, NHLBI Molecular Atlas of Lung Development Program Consortium
Published 2019-10-01