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61“... not need stringent boundary conditions. Compared with the mature Kraken program, the Chebyshev collocation...”
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62by Prakhar Vijayvargiya, Patricio R Jeraldo, Matthew J Thoendel, Kerryl E Greenwood-Quaintance, Zerelda Esquer Garrigos, M Rizwan Sohail, Nicholas Chia, Bobbi S Pritt, Robin Patel“... Origin Through Taxonomic CHAllenge (GOTTCHA) and Kraken 2. RESULTS:Eight samples were included...”
Published 2019-01-01
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63by Min Yap, Conor Feehily, Calum J. Walsh, Mark Fenelon, Eileen F. Murphy, Fionnuala M. McAuliffe, Douwe van Sinderen, Paul W. O’Toole, Orla O’Sullivan, Paul D. Cotter“... classifiers and determined that Kraken2 was the optimal classifier for these samples. This evaluation shows...”
Published 2020-12-01
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64“..., KRAKEN, in the ocean environment of East Sea in Korea. The raw data are preprocessed and reorganized...”
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65by Sandra Christine Andersen, Kristoffer Kiil, Christoffer Bugge Harder, Mathilde Hasseldam Josefsen, Søren Persson, Eva Møller Nielsen, Jeffrey Hoorfar“... tools Kraken and CLARK. More hits were obtained at higher spiking levels, however with no significant...”
Published 2017-06-01
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66“.... Compared with the mature Kraken program, the Chebyshev–collocation method exhibits higher numerical...”
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67by Meghan Maguire, Julie A Kase, Dwayne Roberson, Tim Muruvanda, Eric W Brown, Marc Allard, Steven M Musser, Narjol González-Escalona“... with a k-mer analysis software (Kraken2), E. coli O157:H7 could be detected at 103 CFU/ml (68 reads...”
Published 2021-01-01
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69“.... In bioinformatics assessment, Kraken Metagenomics version 2.0.0 software for metagenomic analysis (classifier...”
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70by William S Taylor, John Pearson, Allison Miller, Sebastian Schmeier, Frank A Frizelle, Rachel V Purcell“... from available RefSeq bacterial and archaeal genomes and a k-mer based algorithm in Kraken2...”
Published 2020-01-01
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71“... at low abundance. Shotgun sequence data analyzed using Kraken2 and Bracken, for taxonomic annotation, had...”
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72by Lei Chen, Lei Chen, Zhandong Li, Tao Zeng, Yu-Hang Zhang, Dejing Liu, Hao Li, Tao Huang, Yu-Dong Cai“...) and rules identified from microbiome profiles processed using the Kraken and the SHOGUN. Collectively, our...”
Published 2020-11-01
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73“... and compared with a nonredundant viral database composed of the complete viral genomes from NCBI using KRAKEN...”
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74“... scales. Distribution of trading volumes (1 sec, 1 min, 1 hour and 1 day) aggregated from the Kraken...”
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75by Ya-Sian Chang, Ming-Hung Hsu, Siang-Jyun Tu, Ju-Chen Yen, Ya-Ting Lee, Hsin-Yuan Fang, Jan-Gowth Chang“.... Metatranscriptomics data were analyzed using SAMSA2 and Kraken2 software. 16S rRNA sequencing was also performed...”
Published 2021-09-01
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76“... from sequence reads. For taxonomic assignment of reads, the MT-CNN model outperformed Kraken 2...”
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77by Kjersti Sturød, Achal Dhariwal, Ulf R. Dahle, Didrik F. Vestrheim, Fernanda C. Petersen“... profiling using Kraken and Bracken software, and resistance profiling using KMA in combination...”
Published 2020-03-01
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78“...), and changes in microbial community structure were monitored using Kraken, while functional annotation...”
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79by Léa Siegwald, Ségolène Caboche, Gaël Even, Eric Viscogliosi, Christophe Audebert, Magali Chabé“..., kraken and CLARK) with different versions and databases, and examined their impact on the outcome...”
Published 2019-09-01
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80by Ivan Gregor, Johannes Dröge, Melanie Schirmer, Christopher Quince, Alice C. McHardy“... rates in a fully automated fashion. PhyloPythiaS+ was compared to MEGAN, taxator-tk, Kraken...”
Published 2016-02-01
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