Clonal hematopoiesis in sickle cell disease

by Abecasis, G.R, Ashley-Koch, A., Bick, A.G, Carneiro-Proietti, A.B, Cato, L.D, Custer, B., Dinardo, C.L, Garrett, M.E, Gladwin, M.T, Kelly, S., Liggett, L.A, Loureiro, P., Maximo, C., Natarajan, P., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Nouraie, S.M, Reiner, A.P, Sabino, E.C, Sankaran, V.G, Telen, M.J, Weinstock, J.S, Williams, D.A, Zhang, Y.
Published 2022

Comparison of the frequencies of ENU-induced point mutations in male germ cells and inherited germline mutations in their offspring

by Ando, T., Honma, M., Masumura, K., Nohmi, T., Toyoda-Hokaiwado, N., Ukai, A.
Published 2021

Kronos scRT: a uniform framework for single-cell replication timing analysis

by Baudrin, L.G, Baulande, S., Bohec, M., Chen, C.-L, Dumont, M., Fachinetti, D., Gnan, S., Josephides, J.M, Saulebekova, D., Spagnuolo, M., Wu, X.
Published 2022

SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints

by Chen, F., Creighton, C.J, Zhang, Y.
Published 2021

Systematic evaluation of NIPT aneuploidy detection software tools with clinically validated NIPT samples

by Ardeshirdavani, A., Bayindir, B., Krjutškov, K., Palta, P., Paluoja, P., Salumets, A., Teder, H., Vermeesch, J.
Published 2021

No evidence of increased mutations in the germline of a group of British nuclear test veterans

by Anderson, R., Dubrova, Y.E, Gillham, C., Moorhouse, A.J, Peto, J., Rake, C., Scholze, M., Sylvius, N.
Published 2022

Synthetic DNA spike-ins (SDSIs) enable sample tracking and detection of inter-sample contamination in SARS-CoV-2 sequencing workflows

by Adams, G., Bauer, M.R, Berenzy, D., Dewey, H.B, Dobbins, S.T, Figueroa, K., Gladden-Young, A., Hooper, D., Kales, S., Lagerborg, K.A, Lemieux, J.E, Loreth, C., MacInnis, B.L, Normandin, E., Park, D.J, Pearlman, L.R, Pierce, V.M, Reilly, S.K, Sabeti, P.C, Shaw, B.M, Shenoy, E.S, Siddle, K.J, Tewhey, R., Zachary, K.C
Published 2022

Careful feature selection is key in classification of Alzheimer's disease patients based on whole-genome sequencing data

by MacHnicka, M.A, Osipowicz, M., Wilczynski, B.
Published 2021

Assessing multiplex tiling PCR sequencing approaches for detecting genomic variants of SARS-CoV-2 in municipal wastewater

by Glier, M., Kuchinski, K., Lin, X., McVea, D., Mierlo, T.R.-V, Prystajecky, N., Tyson, J.R, Ziels, R.M
Published 2021

Enterobacteria Phage SV76 Host Range and Genomic Characterization

by Carmody, C.M, Farquharson, E.L, Nugen, S.R
Published 2022

Genome-guided discovery of natural products through multiplexed low-coverage whole-genome sequencing of soil actinomycetes on Oxford Nanopore flongle

by Bewley, C.A, Liu, H.-B, Ohlemacher, S.I, Rajwani, R., Zhao, G.
Published 2021

LightCUD: a program for diagnosing IBD based on human gut microbiome data

by Li, M., Xie, Z., Xu, C., Zhou, M., Zhu, H., Zhu, X.
Published 2021

New homozygous gpt delta transgenic rat strain improves an efficiency of the in vivo mutagenicity assay

by Ando, T., Fujiwara, S., Hayashi, H., Honma, M., Masumura, K., Nohmi, T., Suzuki, T., Takagi, H., Ukai, A., Yokose, S., You, X.
Published 2021

Whole genome sequencing of Clostridioides difficile PCR ribotype 046 suggests transmission between pigs and humans

by Arnellos, D., Dyrkell, F., Fagerström, A., Johansson, K., Mölling, P., Norén, T., Sundqvist, M., Werner, A.
Published 2021

Complete Genomes of the Anaerobic Degradation Specialists Aromatoleum petrolei ToN1Tand Aromatoleum bremense PbN1T

by Becker, P., Hurek, T., Kalvelage, K., Rabus, R., Reinhardt, R., Reinhold-Hurek, B., Weiten, A.
Published 2021

Comparison of 16S and whole genome dog microbiomes using machine learning

by Ahn, T.-H, Lewis, S., Li, Q., Nash, A.
Published 2021

Whole genome sequence and phenotypic characterization of a Cbm+ serotype e strain of Streptococcus mutans

by Abranches, J., Avilés-Reyes, A., Barbieri, D., Freires, I.A, Kajfasz, J.K, Lemos, J.A, Miller, J.H
Published 2018

Analysis of five deep-sequenced trio-genomes of the Peninsular Malaysia Orang Asli and North Borneo populations

by Deng, L., Farhang, A., Hoh, B.-P, Hoque, M.Z, Jong, B., Kumar, S.V, Liu, C., Lou, H., Lu, D., Marshall, C.R, Ong, R.T.-H, Phipps, M.E, Scherer, S.W, Teo, Y.-Y, Thiruvahindrapuram, B., Thuhairah, A.R, Wong, L.-P, Xie, B., Xu, S., Xu, W., Yew, C.-W, Zhang, X.
Published 2019

Characteristic mutations induced in the small intestine of Msh2-knockout gpt delta mice

by Aoki, Y., Masumura, K., Matsumoto, M., Matsumoto, M., Nohmi, T., Ohno, M., Tsuzuki, T.
Published 2021

Trehalose phosphate synthase complex-mediated regulation of trehalose 6-phosphate homeostasis is critical for development and pathogenesis in magnaporthe oryzae

by Abubakar, Y.S, Chen, X., Fan, Y., Lin, M., Miao, P., Wang, X., Wang, Z., Wen, Y., Wu, Q., Yang, C., Zhang, M., Zheng, W., Zhong, H., Zhou, J.
Published 2021