Popularity and performance of bioinformatics software: the case of gene set analysis

by Jauhari, S., Mora, A., Xie, C.
Published 2021

Expression-based species deconvolution and realignment removes misalignment error in multispecies single-cell data

by Cho, S., Choi, J., Choi, S.M, Chung, J.-H, Kim, J.-I, Lee, C.-H, Lee, W., Moon, H.-G, Yang, H.-K, Yoon, J.-K
Published 2022

On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome

by Casamayor, J.C, García S, A.
Published 2021

DELEAT: gene essentiality prediction and deletion design for bacterial genome reduction

by Garrote-Sánchez, E., Gil, R., Solana, J.
Published 2021

Simulation study and comparative evaluation of viral contiguous sequence identification tools

by Glickman, C., Hendrix, J., Strong, M.
Published 2021

Gene prediction of aging-related diseases based on DNN and Mashup

by Tang, X., Wang, S., Yang, X., Ye, J.
Published 2021

GLEANER: a web server for GermLine cycle Expression ANalysis and Epigenetic Roadmap visualization

by Hua, Y., Liu, G., Zeng, S., Zhang, Y., Zhao, C.
Published 2021

TSEBRA: transcript selector for BRAKER

by Borodovsky, M., Brůna, T., Gabriel, L., Hoff, K.J, Stanke, M.
Published 2021

Search for SINE repeats in the rice genome using correlation-based position weight matrices

by Kamionskaya, A.M, Korotkov, E.V, Suvorova, Y.M
Published 2021

TPSC: a module detection method based on topology potential and spectral clustering in weighted networks and its application in gene co-expression module discovery

by Feng, W., Hou, J., Huang, K., Liu, Y., Shao, W., Ye, X., Yu, C.Y, Zhang, J.
Published 2021

m7GDisAI: N7-methylguanosine (m7G) sites and diseases associations inference based on heterogeneous network

by Chen, J., Liu, H., Ma, J., Song, B., Zang, C., Zhang, L.
Published 2021

Cataloguing experimentally confirmed 80.7 kb-long ACKR1 haplotypes from the 1000 Genomes Project database

by Flegel, W.A, Fratzscher, A.-S, Lan, B., Srivastava, K.
Published 2021

R.ROSETTA: an interpretable machine learning framework

by Baltzer, N., Bornelöv, S., Diamanti, K., Feuk, L., Garbulowski, M., Komorowski, J., Øhrn, A., Smolińska, K., Stoll, P.
Published 2021

Profile hidden Markov model sequence analysis can help remove putative pseudogenes from DNA barcoding and metabarcoding datasets

by Hajibabaei, M., Porter, T.M
Published 2021

Comparison of sequencing data processing pipelines and application to underrepresented African human populations

by Breton, G., Jakobsson, M., Johansson, A.C.V, Schlebusch, C.M, Sjödin, P.
Published 2021

Functional characterisation of the amyotrophic lateral sclerosis risk locus GPX3/TNIP1

by Bye, C.R, Cheng, F.-F, Garton, F.C, Giacomotto, J., Gusev, A., Henders, A.K, Henderson, R.D, Kabashi, E., Kiernan, M.C, Mathers, S., McCombe, P.A, McRae, A.F, Nabais, M.F, Needham, M., Ngo, S.T, Ophoff, R., Qi, T., Restuadi, R., Schultz, D., Steyn, F.J, Thompson, M.J, Turner, B.J, van den Berg, L.H, van Rheenen, W., Veldink, J.H, Wallace, L., Wray, N.R, Wu, Y., Zaitlen, N., Ziser, L.
Published 2022

Predicting environmentally responsive transgenerational differential DNA methylated regions (epimutations) in the genome using a hybrid deep-machine learning approach

by Beck, D., Holder, L., Mavaie, P., Skinner, M.K
Published 2021

SamQL: a structured query language and filtering tool for the SAM/BAM file format

by Lee, C.T, Maragkakis, M.
Published 2021

SLIDR and SLOPPR: flexible identification of spliced leader trans-splicing and prediction of eukaryotic operons from RNA-Seq data

by Müller, B., Pettitt, J., Wenzel, M.A
Published 2021

Reference-agnostic representation and visualization of pan-genomes

by Liang, Q., Lonardi, S.
Published 2021