A functional analysis of omic network embedding spaces reveals key altered functions in cancer

by Ceddia, G., Doria-Belenguer, S., Malod-Dognin, N., Pržulj, N., Xenos, A.
Published 2023

Sequence and functional analyses of Haemophilus spp. genomic islands

by Adegbola, R., Bentley, S., Crook, D.W, Dimopoulou, I.D, Elamin, A.R.E, Erwin, A., Ferguson, D.J.P, Harding, R.M, Harrison, A., Hood, D.W, Juhas, M., Mansfield, L., Mohd-Zain, Z., Munson, R.S, Power, P.M, Smith, A.

Functional Insights into the Kelp Microbiome from Metagenome-Assembled Genomes

by Fogarty, E.C, Miranda, K.K, Pfister, C.A, Watson, A.R, Weigel, B.L
Published 2022

Genome-wide identification of functional enhancers and their potential roles in pig breeding

by Chen, L., Gao, Y., Hou, C., Irwin, D.M, Liu, H., Liu, L., Liu, Y., Wu, Y., Zhang, Y., Zhang, Y., Zhou, Z.
Published 2022

Lantern: an integrative repository of functional annotations for lncRNAs in the human genome

by Daulatabad, S.V, Janga, S.C, Srivastava, R.
Published 2021

Chromosomal level genome of Ilex asprella and insight into antiviral triterpenoid pathway

by Chan, J.J.-S, Hui, J.H.-L, Kong, B.L.-H, Lau, T.-W.D, Law, S.T.-S, Nong, W., Shaw, P.-C, So, W.-L, Wong, K.-H, Zhang, J.
Published 2022

Genome-wide association study and functional validation implicates JADE1 in tauopathy

by Andrews, S.J, Attems, J., Ayalon, G., Beach, T.G, Bhangale, T., Borukov, V.Y, Bowles, K.R, Cairns, N.J, Casella, A., Cherry, J.D, Cobos, I., Cohen, H.T, Corrada, M.M, Cortes, E.P, Crary, J.F, Dangoor, D.K, de Paiva Lopes, K., Dickson, D.W, Farrell, K., Fischer, P., Flanagan, M.E, Franklin, E.E, Frosch, M.P, Frost, B., Fulton-Howard, B., Gandy, S., Gearing, M., Glass, J., Goate, A., Gonzalez, E.M, Graham, R.R, Han, N., Haroutunian, V., Hefti, M.M, Hof, P.R, Humphrey, J., Hunkapiller, J., Hyman, B.T, Iida, M.A, Kapoor, M., Kawas, C.H, Keene, C.D, Kim, S.H, Kofler, J., Kovacs, G.G, Latimer, C.S, Lee, E.B, Lutz, M.I, Mao, Q., Marcora, E., McKee, A.C, McMillan, C.T, Mesulam, M.-M, Metcalf, J., Montine, T.J, Murray, M.E, Nelson, P.T, Novikova, G., Otero-Garcia, M., Perrin, R.J, Pham, T., Poon, W., Purohit, D.P, Raj, T., Renton, A.E, Richardson, T.E, Rissman, R.A, Salehi, B., Sano, M., Schneider, J.A, Shuldberg, S., Sissoko, C.T, Stein, T.D, Tang, W., Teich, A.F, Trojanowski, J.Q, Troncoso, J.C, Udine, E., Vialle, R.A, Vonsattel, J.-P, Walker, J.M, Walsh, H., Weintraub, S., White III, C.L, Whitney, K., Wolk, D.A, Woltjer, R.L, Wong, G., Yu, L.
Published 2022

MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes

by Conrad, R.E, Konstantinidis, K.T, Ruiz-Perez, C.A
Published 2021

Identifying intragenic functional modules of genomic variations associated with cancer phenotypes by learning representation of association networks

by Agasthya, G., Danciu, I., Goethert, I., Huffman, J.E, Justice, A., Kim, M., VA Million Veteran Program
Published 2022

Metabolic function-based normalization improves transcriptome data-driven reduction of genome-scale metabolic models

by Jalili, M., Salehzadeh-Yazdi, A., Scharm, M., Wolkenhauer, O.
Published 2023

Functional Genomic Identification of Predictors of Sensitivity and Mechanisms of Resistance to Multivalent Second-Generation TRAIL-R2 Agonists

by Barthorpe, S., Bateson, J., Chatzipli, A., Ciznadija, D., Crawford, N., Gallagher, L., Garnett, M., Grinkevitch, V., Iyer, V., Lees, A., Longley, D.B, McAllister, K., McCann, C., McDade, S.S, McDermott, U., Michaut, M., Prehn, J., Price, S., Sloma, I., Tice, D.A, Wappett, M., Wesa, A., Wessels, L., Young, J.
Published 2022

Correlated evolution of seed mass and genome size varies among life forms in flowering plants

by Carta, A., Dickie, J., Mattana, E., Vandelook, F.
Published 2022

Genome-Wide Identification of Cassava Glyoxalase I Genes and the Potential Function of MeGLYI-13 in Iron Toxicity Tolerance

by Ding, Z., Guo, J., Hu, X., Li, R., Liu, J., Tang, F., Wang, S., Wang, Y., Yao, Y., Zhou, Q., Zhou, Y.
Published 2022

PangenomeNet: a pan-genome-based network reveals functional modules on antimicrobial resistome for Escherichia coli strains

by Her, H.-L, Lin, P.-T, Wu, Y.-W
Published 2021

Selection and Evaluation of Candidate Reference Genes for Quantitative Real-Time PCR in Aboveground Tissues and Drought Conditions in Rhododendron Delavayi

by Cai, Y., Du, G., Wang, J., Zhang, L., Zhang, M.
Published 2022

Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics

by Chen, N., Chen, S., Fan, W., Kudrna, D., Lee, S., Lei, L., Liu, J., Liu, M., Wang, X., Wing, R.A, Wu, H., Xu, Q., Yang, C., Yi, X., Zhang, B., Zhang, J., Zhang, M.
Published 2022

GenomicDistributions: fast analysis of genomic intervals with Bioconductor

by Danehy, T.L, Kupkova, K., Lawson, J.T, LeRoy, N., Mosquera, J.V, Sheffield, N.C, Smith, J.P, Stolarczyk, M., Stubbs, J.T., IV, Xue, B.
Published 2022

Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization

by Albertin, C.B, Bates, P.A, Clarence, T., Foster, J.S, Fu, X., Hoang, O.P, Kawaguchi, A., Nyholm, S.V, Ritschard, E.A, Schmidbaur, H., Simakov, O., Tanaka, E., Weissenbacher, A., Zimmermann, B.
Published 2022

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

by Aleksander, S., Alexander, M., Cherry, J.M, Douglass, E., Engel, S.R, Karra, K., Miyasato, S.R, Nash, R.S, Simison, M., Skrzypek, M.S, Weng, S., Wong, E.D
Published 2022

TAGOPSIN: collating taxa-specific gene and protein functional and structural information

by Bundhoo, E., Ghoorah, A.W, Jaufeerally-Fakim, Y.
Published 2021