Data-driven biological network alignment that uses topological, sequence, and functional information

by Gu, S., Milenković, T.
Published 2021

Discrete mechanical model of lamellipodial actin network implements molecular clutch mechanism and generates arcs and microspikes

by Rutkowski, D.M, Vavylonis, D.
Published 2021

A Graph Feature Auto-Encoder for the prediction of unobserved node features on biological networks

by Hasibi, R., Michoel, T.
Published 2021

Context-aware multi-token concept recognition of biological entities

by Kim, K., Lee, D.
Published 2021

pyGOMoDo: GPCRs modeling and docking with python

by Giorgetti, A., Ribeiro, R.P
Published 2023

Molecular mechanism of proton-coupled ligand translocation by the bacterial efflux pump EmrE

by Bagiński, M., Czub, J., Jurasz, J., Wieczór, M.
Published 2021

Transcriptomic profiling in canines and humans reveals cancer specific gene modules and biological mechanisms common to both species

by Braisted, J., Breen, M., Gerhold, D., Grewal, G., LeBlanc, A.K, Mazcko, C., Sittampalam, G., Tawa, G.J
Published 2021

Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?

by Diaz-Colunga, J., Diaz-Uriarte, R.
Published 2021

FunOrder: A robust and semi-automated method for the identification of essential biosynthetic genes through computational molecular co-evolution

by Derntl, C., Mach, R.L, Mach-Aigner, A.R, Schaffer, D., Vignolle, G.A, Zehetner, L.
Published 2021

TrancriptomeReconstructoR: data-driven annotation of complex transcriptomes

by Ivanov, M., Marquardt, S., Sandelin, A.
Published 2021

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

by Ades, S., Aleksander, S.A, Bennett, J.A, Berardini, T.Z, Brady, S., Britton, R., Carbon, S., Caruso, S.M, Clements, D., Dalia, R., Defelice, M., Doyle, E.L, Erill, I., Farrar, S., Friedberg, I., Gill, J.J, Gurney, S.M.R, Hu, J.C, Hughes, L., Johnson, A., Kowalski, J.M, LaBonte, S., Li, D., Liles, N., Lovering, R.C, Mans, T.L, McCarthy, F., McIntosh, B., Moore, S.D, Murphy, R., Paustian, T.D, Perdue, S., Peterson, C.N, Prüß, B.M, Ramsey, J., Renfro, D., Ross, C., Saha, M.S, Sheehy, R.R, Siegele, D.A, Tansey, J.T, Temple, L., Thorman, A.W, Trevino, S., Vollmer, A.C, Walbot, V., Willey, J., Zweifel, A.E
Published 2021

Mutation Study of Malaysian Patients with Ornithine Transcarbamylase Deficiency: Clinical, Molecular, and Bioinformatics Analyses of Two Novel Missense Mutations of the OTC Gene

by Ali, E.Z, Jusoh, S.A, Mohd Radzi, M.A, Ngu, L.H, Zakaria, Y.
Published 2018

Automatic consistency assurance for literature-based gene ontology annotation

by Chen, J., Geard, N., Verspoor, K., Zobel, J.
Published 2021

Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences

by Jin, L., Leebens-Mack, J.H, Sankoff, D., Xu, Q., Zhang, X., Zhang, Y., Zheng, C.
Published 2021

DI2: prior-free and multi-item discretization of biological data and its applications

by Alexandre, L., Costa, R.S, Henriques, R.
Published 2021

Experimental and computational investigation of enzyme functional annotations uncovers misannotation in the EC 1.1.3.15 enzyme class

by Engqvist, M.K.M, Rembeza, E.
Published 2021

Motif-pattern dependence of biomolecular phase separation driven by specific interactions

by Meir, Y., Pyo, A.G.T, Weiner, B.G, Wingreen, N.S
Published 2021

XENet: Using a new graph convolution to accelerate the timeline for protein design on quantum computers

by Grattarola, D., Klyshko, E., Maguire, J.B, Melo, H., Mulligan, V.K
Published 2021

Identifying proximal RNA interactions from cDNA-encoded crosslinks with ShapeJumper

by Christy, T.W, Giannetti, C.A, Laederach, A., Weeks, K.M
Published 2021

Memory shapes microbial populations

by Giaimo, S., Gokhale, C.S, Remigi, P.
Published 2021