Search Results - Bert L. de Groot

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  1. 1

    Comment on 'Valid molecular dynamics simulations of human hemoglobin require a surprisingly large box size' by Vytautas Gapsys, Bert L de Groot

    Published in eLife (2019-06-01)
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  2. 2

    Conformational transitions upon ligand binding: holo-structure prediction from apo conformations. by Daniel Seeliger, Bert L de Groot

    Published in PLoS Computational Biology (2010-01-01)
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  3. 3

    Central cavity dehydration as a gating mechanism of potassium channels by Ruo-Xu Gu, Bert L. de Groot

    Published in Nature Communications (2023-04-01)
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  4. 4

    Collective dynamics underlying allosteric transitions in hemoglobin. by Martin D Vesper, Bert L de Groot

    Published in PLoS Computational Biology (2013-01-01)
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  5. 5

    Allosteric Lever: Toward a Principle of Specific Allosteric Response by Maximilian Vossel, Bert L. de Groot, Aljaž Godec

    Published in Physical Review X (2025-06-01)
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  6. 6

    Probing the energy landscape of activation gating of the bacterial potassium channel KcsA. by Tobias Linder, Bert L de Groot, Anna Stary-Weinzinger

    Published in PLoS Computational Biology (2013-01-01)
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  7. 7

    Structure and dynamics of cholesterol-mediated aquaporin-0 arrays and implications for lipid rafts by Po-Lin Chiu, Juan D Orjuela, Bert L de Groot, Camilo Aponte Santamaría, Thomas Walz

    Published in eLife (2024-09-01)
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  8. 8

    Non-active site mutants of HIV-1 protease influence resistance and sensitisation towards protease inhibitors by Tomas Bastys, Vytautas Gapsys, Hauke Walter, Eva Heger, Nadezhda T. Doncheva, Rolf Kaiser, Bert L. de Groot, Olga V. Kalinina

    Published in Retrovirology (2020-05-01)
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  9. 9

    The structure of a potassium-selective ion channel reveals a hydrophobic gate regulating ion permeation by Patricia S. Langan, Venu Gopal Vandavasi, Wojciech Kopec, Brendan Sullivan, Pavel V. Afonne, Kevin L. Weiss, Bert L. de Groot, Leighton Coates

    Published in IUCrJ (2020-09-01)
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  10. 10

    A litmus test for classifying recognition mechanisms of transiently binding proteins by Kalyan S. Chakrabarti, Simon Olsson, Supriya Pratihar, Karin Giller, Kerstin Overkamp, Ko On Lee, Vytautas Gapsys, Kyoung-Seok Ryu, Bert L. de Groot, Frank Noé, Stefan Becker, Donghan Lee, Thomas R. Weikl, Christian Griesinger

    Published in Nature Communications (2022-07-01)
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  11. 11

    The clinical drug candidate anle138b binds in a cavity of lipidic α-synuclein fibrils by Leif Antonschmidt, Dirk Matthes, Rıza Dervişoğlu, Benedikt Frieg, Christian Dienemann, Andrei Leonov, Evgeny Nimerovsky, Vrinda Sant, Sergey Ryazanov, Armin Giese, Gunnar F. Schröder, Stefan Becker, Bert L. de Groot, Christian Griesinger, Loren B. Andreas

    Published in Nature Communications (2022-09-01)
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  12. 12

    Lipidic folding pathway of α-Synuclein via a toxic oligomer by Vrinda Sant, Dirk Matthes, Hisham Mazal, Leif Antonschmidt, Franz Wieser, Kumar T. Movellan, Kai Xue, Evgeny Nimerovsky, Marianna Stampolaki, Magdeline Nathan, Dietmar Riedel, Stefan Becker, Vahid Sandoghdar, Bert L. de Groot, Christian Griesinger, Loren B. Andreas

    Published in Nature Communications (2025-01-01)
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  13. 13

    Anle138b binds predominantly to the central cavity in lipidic Aβ₄₀ fibrils and modulates fibril formation by Mookyoung Han, Benedikt Frieg, Dirk Matthes, Andrei Leonov, Sergey Ryazanov, Karin Giller, Evgeny Nimerovsky, Marianna Stampolaki, Kai Xue, Kerstin Overkamp, Christian Dienemann, Dietmar Riedel, Armin Giese, Stefan Becker, Bert L. de Groot, Gunnar F. Schröder, Loren B. Andreas, Christian Griesinger

    Published in Nature Communications (2025-10-01)
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