Search Results - Mark Gerstein

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  1. 1

    Personal phenotypes to go with personal genomes by Michael Snyder, Sherman Weissman, Mark Gerstein

    Published in Molecular Systems Biology (2009-05-01)
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  2. 2

    Transmembrane protein oxygen content and compartmentalization of cells. by Rajkumar Sasidharan, Andrew Smith, Mark Gerstein

    Published in PLoS ONE (2008-07-01)
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  3. 3

    Identification and correction of spurious spatial correlations in microarray data by Jiang Qian, Yuval Kluger, Haiyuan Yu, Mark Gerstein

    Published in BioTechniques (2003-07-01)
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  4. 4

    Interpretation of genomic variants using a unified biological network approach. by Ekta Khurana, Yao Fu, Jieming Chen, Mark Gerstein

    Published in PLoS Computational Biology (2013-01-01)
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  5. 5

    Estimating growth patterns and driver effects in tumor evolution from individual samples by Leonidas Salichos, William Meyerson, Jonathan Warrell, Mark Gerstein

    Published in Nature Communications (2020-02-01)
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  6. 6

    Deep learning analysis of fMRI data for predicting Alzheimer's Disease: A focus on convolutional neural networks and model interpretability. by Xiao Zhou, Sanchita Kedia, Ran Meng, Mark Gerstein

    Published in PLoS ONE (2024-01-01)
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  7. 7

    Using blockchain to log genome dataset access: efficient storage and query by Gamze Gürsoy, Robert Bjornson, Molly E. Green, Mark Gerstein

    Published in BMC Medical Genomics (2020-07-01)
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  8. 8

    The role of disorder in interaction networks: a structural analysis by Philip M Kim, Andrea Sboner, Yu Xia, Mark Gerstein

    Published in Molecular Systems Biology (2008-03-01)
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  9. 9

    Privacy-preserving cancer type prediction with homomorphic encryption by Esha Sarkar, Eduardo Chielle, Gamze Gursoy, Leo Chen, Mark Gerstein, Michail Maniatakos

    Published in Scientific Reports (2023-01-01)
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  10. 10

    Latent-space embedding of expression data identifies gene signatures from sputum samples of asthmatic patients by Shaoke Lou, Tianxiao Li, Daniel Spakowicz, Xiting Yan, Geoffrey Lowell Chupp, Mark Gerstein

    Published in BMC Bioinformatics (2020-10-01)
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  11. 11

    An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits. by Yang Liu, Jianrong Li, Lee Sam, Chern-Sing Goh, Mark Gerstein, Yves A Lussier

    Published in PLoS Computational Biology (2006-11-01)
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  12. 12

    Constructing a full, multiple-layer interactome for SARS-CoV-2 in the context of lung disease: Linking the virus with human genes and microbes. by Shaoke Lou, Mingjun Yang, Tianxiao Li, Weihao Zhao, Hannah Cevasco, Yucheng T Yang, Mark Gerstein

    Published in PLoS Computational Biology (2023-07-01)
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  13. 13

    DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring by Jing Zhang, Jason Liu, Donghoon Lee, Shaoke Lou, Zhanlin Chen, Gamze Gürsoy, Mark Gerstein

    Published in BMC Bioinformatics (2020-07-01)
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  14. 14

    The chronODE framework for modelling multi-omic time series with ordinary differential equations and machine learning by Beatrice Borsari, Mor Frank, Eve S. Wattenberg, Ke Xu, Susanna X. Liu, Xuezhu Yu, Mark Gerstein

    Published in Nature Communications (2025-08-01)
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  15. 15

    Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data. by Che Yu Lee, Yuhang Chen, Ziheng Duan, Min Xu, Matthew J Girgenti, Ke Xu, Mark Gerstein, Jing Zhang

    Published in PLoS Computational Biology (2022-10-01)
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  16. 16

    Discordant Expression of Circulating microRNA from Cellular and Extracellular Sources. by Ravi Shah, Kahraman Tanriverdi, Daniel Levy, Martin Larson, Mark Gerstein, Eric Mick, Joel Rozowsky, Robert Kitchen, Venkatesh Murthy, Ekaterina Mikalev, Jane E Freedman

    Published in PLoS ONE (2016-01-01)
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  17. 17

    Transcriptional determinism and stochasticity contribute to the complexity of autism-associated SHANK family genes by Xiaona Lu, Pengyu Ni, Paola Suarez-Meade, Yu Ma, Emily Niemitz Forrest, Guilin Wang, Yi Wang, Alfredo Quiñones-Hinojosa, Mark Gerstein, Yong-hui Jiang

    Published in Cell Reports (2024-07-01)
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  18. 18

    Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data. by Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein

    Published in PLoS Computational Biology (2011-11-01)
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  19. 19

    GRAM: A GeneRAlized Model to predict the molecular effect of a non-coding variant in a cell-type specific manner. by Shaoke Lou, Kellie A Cotter, Tianxiao Li, Jin Liang, Hussein Mohsen, Jason Liu, Jing Zhang, Sandra Cohen, Jinrui Xu, Haiyuan Yu, Mark A Rubin, Mark Gerstein

    Published in PLoS Genetics (2019-08-01)
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  20. 20

    Global identification and characterization of transcriptionally active regions in the rice genome. by Lei Li, Xiangfeng Wang, Rajkumar Sasidharan, Viktor Stolc, Wei Deng, Hang He, Jan Korbel, Xuewei Chen, Waraporn Tongprasit, Pamela Ronald, Runsheng Chen, Mark Gerstein, Xing Wang Deng

    Published in PLoS ONE (2007-01-01)
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