ADEMA: an algorithm to determine expected metabolite level alterations using mutual information.

by A Ercument Cicek, Ilya Bederman, Leigh Henderson, Mitchell L Drumm, Gultekin Ozsoyoglu
Published 2013-01-01

Robust inference of kinase activity using functional networks

by Serhan Yılmaz, Marzieh Ayati, Daniela Schlatzer, A. Ercüment Çiçek, Mark R. Chance, Mehmet Koyutürk
Published 2021-02-01

Detailed modeling of positive selection improves detection of cancer driver genes

by Siming Zhao, Jun Liu, Pranav Nanga, Yuwen Liu, A. Ercument Cicek, Nicholas Knoblauch, Chuan He, Matthew Stephens, Xin He
Published 2019-07-01

Machine learning assisted intraoperative assessment of brain tumor margins using HRMAS NMR spectroscopy.

by Doruk Cakmakci, Emin Onur Karakaslar, Elisa Ruhland, Marie-Pierre Chenard, Francois Proust, Martial Piotto, Izzie Jacques Namer, A Ercument Cicek
Published 2020-11-01

Matrix Metalloproteinase-11 Promotes Early Mouse Mammary Gland Tumor Growth through Metabolic Reprogramming and Increased IGF1/AKT/FoxO1 Signaling Pathway, Enhanced ER Stress and A...

by Bing Tan, Amélie Jaulin, Caroline Bund, Hassiba Outilaft, Corinne Wendling, Marie-Pierrette Chenard, Fabien Alpy, A. Ercüment Cicek, Izzie J. Namer, Catherine Tomasetto, Nassim Dali-Youcef
Published 2020-08-01

AMULET: a novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data

by Asa Thibodeau, Alper Eroglu, Christopher S. McGinnis, Nathan Lawlor, Djamel Nehar-Belaid, Romy Kursawe, Radu Marches, Daniel N. Conrad, George A. Kuchel, Zev J. Gartner, Jacques Banchereau, Michael L. Stitzel, A. Ercument Cicek, Duygu Ucar
Published 2021-09-01

Metabolome Profiling by HRMAS NMR Spectroscopy of Pheochromocytomas and Paragangliomas Detects SDH Deficiency: Clinical and Pathophysiological Implications

by Alessio Imperiale, François-Marie Moussallieh, Philippe Roche, Stéphanie Battini, A. Ercument Cicek, Frédéric Sebag, Laurent Brunaud, Anne Barlier, Karim Elbayed, Anderson Loundou, Philippe Bachellier, Bernard Goichot, Constantine A. Stratakis, Karel Pacak, Izzie-Jacques Namer, David Taïeb
Published 2015-01-01

Whole-Genome and RNA Sequencing Reveal Variation and Transcriptomic Coordination in the Developing Human Prefrontal Cortex

by Donna M. Werling, Sirisha Pochareddy, Jinmyung Choi, Joon-Yong An, Brooke Sheppard, Minshi Peng, Zhen Li, Claudia Dastmalchi, Gabriel Santpere, André M.M. Sousa, Andrew T.N. Tebbenkamp, Navjot Kaur, Forrest O. Gulden, Michael S. Breen, Lindsay Liang, Michael C. Gilson, Xuefang Zhao, Shan Dong, Lambertus Klei, A. Ercument Cicek, Joseph D. Buxbaum, Homa Adle-Biassette, Jean-Leon Thomas, Kimberly A. Aldinger, Diana R. O’Day, Ian A. Glass, Noah A. Zaitlen, Michael E. Talkowski, Kathryn Roeder, Matthew W. State, Bernie Devlin, Stephan J. Sanders, Nenad Sestan
Published 2020-04-01