Community Detection in Large-Scale Bipartite Biological Networks

by Genís Calderer, Marieke L. Kuijjer, Marieke L. Kuijjer
Published 2021-04-01

lionessR: single sample network inference in R

by Marieke L Kuijjer, Ping-Han Hsieh, John Quackenbush, Kimberly Glass
Published 2019-10-01

Linking Immunity with Genomics in Sarcomas: Is Genomic Complexity an Immunogenic Trigger?

by Siddh van Oost, Debora M. Meijer, Marieke L. Kuijjer, Judith V. M. G. Bovée, Noel F. C. C. de Miranda
Published 2021-08-01

Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas.

by David G P van IJzendoorn, Karoly Szuhai, Inge H Briaire-de Bruijn, Marie Kostine, Marieke L Kuijjer, Judith V M G Bovée
Published 2019-02-01

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

by Joseph N. Paulson, Cho-Yi Chen, Camila M. Lopes-Ramos, Marieke L. Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush
Published 2017-10-01

Regulatory network changes between cell lines and their tissues of origin

by Camila M. Lopes-Ramos, Joseph N. Paulson, Cho-Yi Chen, Marieke L. Kuijjer, Maud Fagny, John Platig, Abhijeet R. Sonawane, Dawn L. DeMeo, John Quackenbush, Kimberly Glass
Published 2017-09-01

Modulation of the osteosarcoma expression phenotype by microRNAs.

by Heidi M Namløs, Leonardo A Meza-Zepeda, Tale Barøy, Ingrid H G Østensen, Stine H Kresse, Marieke L Kuijjer, Massimo Serra, Horst Bürger, Anne-Marie Cleton-Jansen, Ola Myklebost
Published 2012-01-01

An imprinted non-coding genomic cluster at 14q32 defines clinically relevant molecular subtypes in osteosarcoma across multiple independent datasets

by Katherine E. Hill, Andrew D. Kelly, Marieke L. Kuijjer, William Barry, Ahmed Rattani, Cassandra C. Garbutt, Haydn Kissick, Katherine Janeway, Antonio Perez-Atayde, Jeffrey Goldsmith, Mark C. Gebhardt, Mohamed S. Arredouani, Greg Cote, Francis Hornicek, Edwin Choy, Zhenfeng Duan, John Quackenbush, Benjamin Haibe-Kains, Dimitrios Spentzos
Published 2017-05-01

Cross-species genomic landscape comparison of human mucosal melanoma with canine oral and equine melanoma

by Kim Wong, Louise van der Weyden, Courtney R. Schott, Alastair Foote, Fernando Constantino-Casas, Sionagh Smith, Jane M. Dobson, Elizabeth P. Murchison, Hong Wu, Iwei Yeh, Douglas R. Fullen, Nancy Joseph, Boris C. Bastian, Rajiv M. Patel, Inigo Martincorena, Carla Daniela Robles-Espinoza, Vivek Iyer, Marieke L. Kuijjer, Mark J. Arends, Thomas Brenn, Paul W. Harms, Geoffrey A. Wood, David J. Adams
Published 2019-01-01