Genome-Wide Sex and Gender Differences in Cancer

by Camila M. Lopes-Ramos, John Quackenbush, John Quackenbush, John Quackenbush, Dawn L. DeMeo, Dawn L. DeMeo
Published 2020-11-01

Decomposition of gene expression state space trajectories.

by Jessica C Mar, John Quackenbush
Published 2009-12-01

Using graph convolutional neural networks to learn a representation for glycans

by Rebekka Burkholz, John Quackenbush, Daniel Bojar
Published 2021-06-01

Extended Abstract

by John Maher, Lung-Ji Chang, John Quackenbush
Published 2016-05-01

Why is there a lack of consensus on molecular subgroups of glioblastoma? Understanding the nature of biological and statistical variability in glioblastoma expression data.

by Nicholas F Marko, John Quackenbush, Robert J Weil
Published 2011-01-01

Passing messages between biological networks to refine predicted interactions.

by Kimberly Glass, Curtis Huttenhower, John Quackenbush, Guo-Cheng Yuan
Published 2013-01-01

Gene Targeting in Disease Networks

by Deborah Weighill, Marouen Ben Guebila, Kimberly Glass, Kimberly Glass, Kimberly Glass, John Platig, John Platig, Jen Jen Yeh, John Quackenbush, John Quackenbush
Published 2021-04-01

Bipartite Community Structure of eQTLs.

by John Platig, Peter J Castaldi, Dawn DeMeo, John Quackenbush
Published 2016-09-01

lionessR: single sample network inference in R

by Marieke L Kuijjer, Ping-Han Hsieh, John Quackenbush, Kimberly Glass
Published 2019-10-01

Clustering Sparse Data With Feature Correlation With Application to Discover Subtypes in Cancer

by Jipeng Qiang, Wei Ding, Marieke Kuijjer, John Quackenbush, Ping Chen
Published 2020-01-01

attract: A method for identifying core pathways that define cellular phenotypes.

by Jessica C Mar, Nicholas A Matigian, John Quackenbush, Christine A Wells
Published 2011-01-01

Estimating Sample-Specific Regulatory Networks

by Marieke Lydia Kuijjer, Matthew George Tung, GuoCheng Yuan, John Quackenbush, Kimberly Glass
Published 2019-04-01

Nac1 Coordinates a Sub-network of Pluripotency Factors to Regulate Embryonic Stem Cell Differentiation

by Mohan Malleshaiah, Megha Padi, Pau Rué, John Quackenbush, Alfonso Martinez-Arias, Jeremy Gunawardena
Published 2016-02-01

Multi-omic regulatory networks capture downstream effects of kinase inhibition in Mycobacterium tuberculosis

by Albert T. Young, Xavier Carette, Michaela Helmel, Hanno Steen, Robert N. Husson, John Quackenbush, John Platig
Published 2021-01-01

Histopathological Image QTL Discovery of Immune Infiltration Variants

by Joseph D. Barry, Maud Fagny, Joseph N. Paulson, Hugo J.W.L. Aerts, John Platig, John Quackenbush
Published 2018-07-01

Using shRNA experiments to validate gene regulatory networks

by Catharina Olsen, Kathleen Fleming, Niall Prendergast, Renee Rubio, Frank Emmert-Streib, Gianluca Bontempi, John Quackenbush, Benjamin Haibe-Kains
Published 2015-06-01

CRX is a diagnostic marker of retinal and pineal lineage tumors.

by Sandro Santagata, Cecile L Maire, Ahmed Idbaih, Lars Geffers, Mick Correll, Kristina Holton, John Quackenbush, Keith L Ligon
Published 2009-11-01

Stem cell-like gene expression in ovarian cancer predicts type II subtype and prognosis.

by Matthew Schwede, Dimitrios Spentzos, Stefan Bentink, Oliver Hofmann, Benjamin Haibe-Kains, David Harrington, John Quackenbush, Aedín C Culhane
Published 2013-01-01

Gene Expression Variability as a Unifying Element of the Pluripotency Network

by Elizabeth A. Mason, Jessica C. Mar, Andrew L. Laslett, Martin F. Pera, John Quackenbush, Ernst Wolvetang, Christine A. Wells
Published 2014-08-01

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

by Joseph N. Paulson, Cho-Yi Chen, Camila M. Lopes-Ramos, Marieke L. Kuijjer, John Platig, Abhijeet R. Sonawane, Maud Fagny, Kimberly Glass, John Quackenbush
Published 2017-10-01