Evolution of centrality measurements for the detection of essential proteins in biological networks

by Mahdi Jalili, Ali Salehzadeh-Yazdi, Ali Salehzadeh-Yazdi, Shailendra Gupta, Shailendra Gupta, Olaf Wolkenhauer, Marjan Yaghmaie, Osbaldo Resendis-Antonio, Kamran Alimoghaddam
Published 2016-08-01

Controllability in cancer metabolic networks according to drug targets as driver nodes.

by Yazdan Asgari, Ali Salehzadeh-Yazdi, Falk Schreiber, Ali Masoudi-Nejad
Published 2013-01-01

Computational analysis of reciprocal association of metabolism and epigenetics in the budding yeast: a genome-scale metabolic model (GSMM) approach.

by Ali Salehzadeh-Yazdi, Yazdan Asgari, Ali Akbar Saboury, Ali Masoudi-Nejad
Published 2014-01-01

Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models

by Mahdi Jalili, Martin Scharm, Olaf Wolkenhauer, Mehdi Damaghi, Ali Salehzadeh-Yazdi
Published 2021-06-01

Omics Integration Analyses Reveal the Early Evolution of Malignancy in Breast Cancer

by Shamim Sarhadi, Ali Salehzadeh-Yazdi, Mehdi Damaghi, Nosratollah Zarghami, Olaf Wolkenhauer, Hedayatollah Hosseini
Published 2020-06-01

Meta-Analysis of Gene Expression Profiles in Acute Promyelocytic Leukemia Reveals Involved Pathways

by Mahdi Jalili, Ali Salehzadeh-Yazdi, Saeed Mohammadi, Marjan Yaghmaie, Ardeshir Ghavamzadeh, Kamran Alimoghaddam
Published 2016-12-01

CytoKavosh: a cytoscape plug-in for finding network motifs in large biological networks.

by Ali Masoudi-Nejad, Mitra Ansariola, Zahra Razaghi Moghadam Kashani, Ali Salehzadeh-Yazdi, Sahand Khakabimamaghani
Published 2012-01-01

A Metabolic Model of Intestinal Secretions: The Link between Human Microbiota and Colorectal Cancer Progression

by Pejman Salahshouri, Modjtaba Emadi-Baygi, Mahdi Jalili, Faiz M. Khan, Olaf Wolkenhauer, Ali Salehzadeh-Yazdi
Published 2021-07-01

CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis.

by Mahdi Jalili, Ali Salehzadeh-Yazdi, Yazdan Asgari, Seyed Shahriar Arab, Marjan Yaghmaie, Ardeshir Ghavamzadeh, Kamran Alimoghaddam
Published 2015-01-01

Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

by Snorre Sulheim, Tjaša Kumelj, Dino van Dissel, Ali Salehzadeh-Yazdi, Chao Du, Gilles P. van Wezel, Kay Nieselt, Eivind Almaas, Alexander Wentzel, Eduard J. Kerkhoven
Published 2020-09-01

Towards biomarkers for outcomes after pancreatic ductal adenocarcinoma and ischaemic stroke, with focus on (co)-morbidity and ageing/cellular senescence (SASKit): protocol for a pr...

by Christian Junghanss, Daniel Palmer, Larissa Henze, Uwe Walter, Hugo Murua Escobar, Robert Jaster, Rüdiger Köhling, Falko Lange, Ali Salehzadeh-Yazdi, Olaf Wolkenhauer, Mohamed Hamed, Israel Barrantes, Steffen Möller, Axel Kowald, Nicole Heussen, Georg Fuellen
Published 2020-12-01