Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces

by Jiarui Ding, Aviv Regev
Published 2021-05-01

BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization

by Carl G. de Boer, Aviv Regev
Published 2018-07-01

Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins

by Zhe Ji, Ruisheng Song, Aviv Regev, Kevin Struhl
Published 2015-12-01

A cell-free nanobody engineering platform rapidly generates SARS-CoV-2 neutralizing nanobodies

by Xun Chen, Matteo Gentili, Nir Hacohen, Aviv Regev
Published 2021-09-01

Changes in Nucleosome Occupancy Associated with Metabolic Alterations in Aged Mammalian Liver

by Irina M. Bochkis, Dariusz Przybylski, Jenny Chen, Aviv Regev
Published 2014-11-01

Integrated regulatory models for inference of subtype‐specific susceptibilities in glioblastoma

by Yunpeng Liu, Ning Shi, Aviv Regev, Shan He, Michael T Hemann
Published 2020-09-01

MAUDE: inferring expression changes in sorting-based CRISPR screens

by Carl G. de Boer, John P. Ray, Nir Hacohen, Aviv Regev
Published 2020-06-01

The role of nucleosome positioning in the evolution of gene regulation.

by Alexander M Tsankov, Dawn Anne Thompson, Amanda Socha, Aviv Regev, Oliver J Rando
Published 2010-07-01

Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods

by Brian J. Haas, Alexander Dobin, Bo Li, Nicolas Stransky, Nathalie Pochet, Aviv Regev
Published 2019-10-01

Genome-scale identification of transcription factors that mediate an inflammatory network during breast cellular transformation

by Zhe Ji, Lizhi He, Asaf Rotem, Andreas Janzer, Christine S. Cheng, Aviv Regev, Kevin Struhl
Published 2018-05-01

Enforcement of developmental lineage specificity by transcription factor Oct1

by Zuolian Shen, Jinsuk Kang, Arvind Shakya, Marcin Tabaka, Elke A Jarboe, Aviv Regev, Dean Tantin
Published 2017-05-01

Combinatorial prediction of marker panels from single‐cell transcriptomic data

by Conor Delaney, Alexandra Schnell, Louis V Cammarata, Aaron Yao‐Smith, Aviv Regev, Vijay K Kuchroo, Meromit Singer
Published 2019-10-01

A Switch in p53 Dynamics Marks Cells That Escape from DSB-Induced Cell Cycle Arrest

by Michael Tsabar, Caroline S. Mock, Veena Venkatachalam, Jose Reyes, Kyle W. Karhohs, Trudy G. Oliver, Aviv Regev, Ashwini Jambhekar, Galit Lahav
Published 2020-08-01

RBPJ Controls Development of Pathogenic Th17 Cells by Regulating IL-23 Receptor Expression

by Gerd Meyer zu Horste, Chuan Wu, Chao Wang, Le Cong, Mathias Pawlak, Youjin Lee, Wassim Elyaman, Sheng Xiao, Aviv Regev, Vijay K. Kuchroo
Published 2016-07-01

Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution

by Hansruedi Mathys, Chinnakkaruppan Adaikkan, Fan Gao, Jennie Z. Young, Elodie Manet, Martin Hemberg, Philip L. De Jager, Richard M. Ransohoff, Aviv Regev, Li-Huei Tsai
Published 2017-10-01

Heterogeneous Responses of Hematopoietic Stem Cells to Inflammatory Stimuli Are Altered with Age

by Mati Mann, Arnav Mehta, Carl G. de Boer, Monika S. Kowalczyk, Kevin Lee, Pearce Haldeman, Noga Rogel, Abigail R. Knecht, Daneyal Farouq, Aviv Regev, David Baltimore
Published 2018-12-01

Transcriptional profiling of Plasmodium falciparum parasites from patients with severe malaria identifies distinct low vs. high parasitemic clusters.

by Danny A Milner, Nathalie Pochet, Malkie Krupka, Chris Williams, Karl Seydel, Terrie E Taylor, Yves Van de Peer, Aviv Regev, Dyann Wirth, Johanna P Daily, Jill P Mesirov
Published 2012-01-01

Geometry-dependent functional changes in iPSC-derived cardiomyocytes probed by functional imaging and RNA sequencing.

by Christopher A Werley, Miao-Ping Chien, Jellert Gaublomme, Karthik Shekhar, Vincent Butty, B Alexander Yi, Joel M Kralj, William Bloxham, Laurie A Boyer, Aviv Regev, Adam E Cohen
Published 2017-01-01

Systematic dissection of roles for chromatin regulators in a yeast stress response.

by Assaf Weiner, Hsiuyi V Chen, Chih Long Liu, Ayelet Rahat, Avital Klien, Luis Soares, Mohanram Gudipati, Jenna Pfeffner, Aviv Regev, Stephen Buratowski, Jeffrey A Pleiss, Nir Friedman, Oliver J Rando
Published 2012-01-01

Correction: Evolutionary principles of modular gene regulation in yeasts

by Dawn A Thompson, Sushmita Roy, Michelle Chan, Mark P Styczynski, Jenna Pfiffner, Courtney French, Amanda Socha, Anne Thielke, Sara Napolitano, Paul Muller, Manolis Kellis, Jay H Konieczka, Ilan Wapinski, Aviv Regev
Published 2013-07-01