Trm9-Catalyzed tRNA Modifications Regulate Global Protein Expression by Codon-Biased Translation

by Deng, Wenjun, Babu, I. Ramesh, Su, Dan, Yin, Shanye, Begley, Thomas J., Dedon, Peter C.
Published 2016

Sequence-Dependent Variation in the Reactivity of 8-Oxo-7,8-dihydro-2'-deoxyguanosine toward Oxidation

by Lim, Kok Seong, Taghizadeh, Koli, Wishnok, John S., Babu, I. Ramesh, Shafirovich, Vladimir, Geacintov, Nicholas E., Dedon, Peter C.
Published 2014

Highly Predictive Reprogramming of tRNA Modifications Is Linked to Selective Expression of Codon-Biased Genes

by Begley, Thomas J., Li, Fugen, Chan, Clement T. Y., Deng, Wenjun, DeMott, Michael S, Babu, I. Ramesh, Dedon, Peter C
Published 2017

In vitro analysis of phosphorothioate modification of DNA reveals substrate recognition by a multiprotein complex

by Cao, Bo, Zheng, Xiaoqing, Cheng, Qiuxiang, Yao, Fen, Zheng, Tao, Ramesh Babu, I., Zhou, Huchen, You, Delin, Dedon, Peter C.
Published 2015

In Situ Analysis of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Oxidation Reveals Sequence- and Agent-Specific Damage Spectra

by Lim, Kok Seong, Cui, Liang, Taghizadeh, Koli, Wishnok, John S., Chan, Wan Simon, DeMott, Michael S., Babu, I. Ramesh, Dedon, Peter C., Tannenbaum, Steven Robert
Published 2014

Identification of N[superscript 6],N[superscript 6]-Dimethyladenosine in Transfer RNA from Mycobacterium bovis Bacille Calmette-Guérin

by Chan, Tsz Yan Clement, Chionh, Yok Hian, Ho, Chia-Hua, Lim, Kok Seong, Babu, I. Ramesh, Ang, Emily, Wenwei, Lin, Alonso, Sylvie, Dedon, Peter C.
Published 2014

Identification and codon reading properties of 5-cyanomethyl uridine, a new modified nucleoside found in the anticodon wobble position of mutant haloarchaeal isoleucine tRNAs

by Mandal, Debabrata, Koehrer, Caroline, Su, Dan, Babu, I. Ramesh, Chan, Tsz Yan Clement, Liu, Yuchen, Soll, Dieter, Blum, Paul, Kuwahara, Masayasu, Dedon, Peter C., Rajbhandary, Uttam L.
Published 2014

Quantitative analysis of tRNA modifications by HPLC-coupled mass spectrometry

by Su, Dan, Gu, Chen, Lim, Kok Seong, Chionh, Yok Hian, Chan, Clement T. Y., McBee, Megan E., Russell, Brandon S., Ramesh Babu, I., Begley, Thomas J., Dedon, Peter C.
Published 2015

tRNA-mediated codon-biased translation in mycobacterial hypoxic persistence

by Chionh, Yok Hian, McBee, Megan, Babu, I. Ramesh, Hia, Fabian, Lin, Wenwei, Zhao, Wei, Cao, Jianshu, Dziergowska, Agnieszka, Malkiewicz, Andrzej, Begley, Thomas J., Alonso, Sylvie, Dedon, Peter C.
Published 2016