Combining Bioinformatics and Biophysics to Understand Protein-Protein and Protein-Ligand Interactions

by Barry Honig
Published 2002-01-01

VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity.

by Brian Y Chen, Barry Honig
Published 2010-08-01

Using structure to explore the sequence alignment space of remote homologs.

by Andrew Kuziemko, Barry Honig, Donald Petrey
Published 2011-10-01

Predicting peptide-mediated interactions on a genome-wide scale.

by T Scott Chen, Donald Petrey, Jose Ignacio Garzon, Barry Honig
Published 2015-05-01

Sensing Actin Dynamics through Adherens Junctions

by Indrajyoti Indra, Regina B. Troyanovsky, Lawrence Shapiro, Barry Honig, Sergey M. Troyanovsky
Published 2020-02-01

A computational interactome and functional annotation for the human proteome

by José Ignacio Garzón, Lei Deng, Diana Murray, Sagi Shapira, Donald Petrey, Barry Honig
Published 2016-10-01

miRNA-Disease Association Prediction with Collaborative Matrix Factorization

by Zhen Shen, You-Hua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang
Published 2017-01-01

A High-Throughput Strategy for Dissecting Mammalian Genetic Interactions.

by Victoria B Stockman, Lila Ghamsari, Gorka Lasso, Barry Honig, Sagi D Shapira, Harris H Wang
Published 2016-01-01

DIP/Dpr interactions and the evolutionary design of specificity in protein families

by Alina P. Sergeeva, Phinikoula S. Katsamba, Filip Cosmanescu, Joshua J. Brewer, Goran Ahlsen, Seetha Mannepalli, Lawrence Shapiro, Barry Honig
Published 2020-05-01

γ-Protocadherin structural diversity and functional implications

by Kerry Marie Goodman, Rotem Rubinstein, Chan Aye Thu, Seetha Mannepalli, Fabiana Bahna, Göran Ahlsén, Chelsea Rittenhouse, Tom Maniatis, Barry Honig, Lawrence Shapiro
Published 2016-10-01

Molecular basis of sidekick-mediated cell-cell adhesion and specificity

by Kerry M Goodman, Masahito Yamagata, Xiangshu Jin, Seetha Mannepalli, Phinikoula S Katsamba, Göran Ahlsén, Alina P Sergeeva, Barry Honig, Joshua R Sanes, Lawrence Shapiro
Published 2016-09-01

Homophilic and Heterophilic Interactions of Type II Cadherins Identify Specificity Groups Underlying Cell-Adhesive Behavior

by Julia Brasch, Phinikoula S. Katsamba, Oliver J. Harrison, Göran Ahlsén, Regina B. Troyanovsky, Indrajyoti Indra, Anna Kaczynska, Benjamin Kaeser, Sergey Troyanovsky, Barry Honig, Lawrence Shapiro
Published 2018-05-01

Family-wide Structural and Biophysical Analysis of Binding Interactions among Non-clustered δ-Protocadherins

by Oliver J. Harrison, Julia Brasch, Phinikoula S. Katsamba, Goran Ahlsen, Alex J. Noble, Hanbin Dan, Rosemary V. Sampogna, Clinton S. Potter, Bridget Carragher, Barry Honig, Lawrence Shapiro
Published 2020-02-01