A tandem simulation framework for predicting mapping quality

by Ben Langmead
Published 2017-08-01

Dashing: fast and accurate genomic distances with HyperLogLog

by Daniel N. Baker, Ben Langmead
Published 2019-12-01

Improved metagenomic analysis with Kraken 2

by Derrick E. Wood, Jennifer Lu, Ben Langmead
Published 2019-11-01

FORGe: prioritizing variants for graph genomes

by Jacob Pritt, Nae-Chyun Chen, Ben Langmead
Published 2018-12-01

Reference flow: reducing reference bias using multiple population genomes

by Nae-Chyun Chen, Brad Solomon, Taher Mun, Sheila Iyer, Ben Langmead
Published 2021-01-01

Prefix-free parsing for building big BWTs

by Christina Boucher, Travis Gagie, Alan Kuhnle, Ben Langmead, Giovanni Manzini, Taher Mun
Published 2019-05-01

Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space

by Richard Wilton, Tamas Budavari, Ben Langmead, Sarah J. Wheelan, Steven L. Salzberg, Alexander S. Szalay
Published 2015-03-01

Pan-genomic matching statistics for targeted nanopore sequencing

by Omar Ahmed, Massimiliano Rossi, Sam Kovaka, Michael C. Schatz, Travis Gagie, Christina Boucher, Ben Langmead
Published 2021-06-01

ASCOT identifies key regulators of neuronal subtype-specific splicing

by Jonathan P. Ling, Christopher Wilks, Rone Charles, Patrick J. Leavey, Devlina Ghosh, Lizhi Jiang, Clayton P. Santiago, Bo Pang, Anand Venkataraman, Brian S. Clark, Abhinav Nellore, Ben Langmead, Seth Blackshaw
Published 2020-01-01

Samovar: Single-Sample Mosaic Single-Nucleotide Variant Calling with Linked Reads

by Charlotte A. Darby, James R. Fitch, Patrick J. Brennan, Benjamin J. Kelly, Natalie Bir, Vincent Magrini, Jeffrey Leonard, Catherine E. Cottrell, Julie M. Gastier-Foster, Richard K. Wilson, Elaine R. Mardis, Peter White, Ben Langmead, Michael C. Schatz
Published 2019-08-01