CapZyme-Seq: A 5′-RNA-Seq Method for Differential Detection and Quantitation of NAD-Capped and Uncapped 5′-Triphosphate RNA

by Irina O. Vvedenskaya, Bryce E. Nickels
Published 2020-06-01

XACT-seq: A photocrosslinking-based technique for detection of the RNA polymerase active-center position relative to DNA in Escherichia coli

by Chirangini Pukhrambam, Irina O. Vvedenskaya, Bryce E. Nickels
Published 2021-12-01

The primary σ factor in Escherichia coli can access the transcription elongation complex from solution in vivo

by Seth R Goldman, Nikhil U Nair, Christopher D Wells, Bryce E Nickels, Ann Hochschild
Published 2015-09-01

The mechanism of variability in transcription start site selection

by Libing Yu, Jared T Winkelman, Chirangini Pukhrambam, Terence R Strick, Bryce E Nickels, Richard H Ebright
Published 2017-11-01

Ubiquitous promoter-localization of essential virulence regulators in Francisella tularensis.

by Kathryn M Ramsey, Melisa L Osborne, Irina O Vvedenskaya, Cathy Su, Bryce E Nickels, Simon L Dove
Published 2015-04-01

A Conserved Pattern of Primer-Dependent Transcription Initiation in Escherichia coli and Vibrio cholerae Revealed by 5' RNA-seq.

by Sergey Y Druzhinin, Ngat T Tran, Kyle S Skalenko, Seth R Goldman, Jared G Knoblauch, Simon L Dove, Bryce E Nickels
Published 2015-07-01

Detection of spacer precursors formed in vivo during primed CRISPR adaptation

by Anna A. Shiriaeva, Ekaterina Savitskaya, Kirill A. Datsenko, Irina O. Vvedenskaya, Iana Fedorova, Natalia Morozova, Anastasia Metlitskaya, Anton Sabantsev, Bryce E. Nickels, Konstantin Severinov, Ekaterina Semenova
Published 2019-10-01

Highly efficient 5' capping of mitochondrial RNA with NAD+ and NADH by yeast and human mitochondrial RNA polymerase

by Jeremy G Bird, Urmimala Basu, David Kuster, Aparna Ramachandran, Ewa Grudzien-Nogalska, Atif Towheed, Douglas C Wallace, Megerditch Kiledjian, Dmitry Temiakov, Smita S Patel, Richard H Ebright, Bryce E Nickels
Published 2018-12-01

Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae

by Chenxi Qiu, Huiyan Jin, Irina Vvedenskaya, Jordi Abante Llenas, Tingting Zhao, Indranil Malik, Alex M. Visbisky, Scott L. Schwartz, Ping Cui, Pavel Čabart, Kang Hoo Han, William K. M. Lai, Richard P. Metz, Charles D. Johnson, Sing-Hoi Sze, B. Franklin Pugh, Bryce E. Nickels, Craig D. Kaplan
Published 2020-06-01