UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions

by Bulyk, Martha L., Robasky, Kimberly
Published 2012

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

by Bulyk, Martha L., Newburger, Daniel E.
Published 2012

Distinguishing direct versus indirect transcription factor-DNA interactions

by Gordan, Raluca, Hartemink, Alexander J., Bulyk, Martha L.
Published 2013

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions

by Barrera, Luis Alberto, Bulyk, Martha L., Hume, Maxwell A., Gisselbrecht, Stephen S.
Published 2014

Distant cis-regulatory elements in human skeletal muscle differentiation

by McCord, Rachel P., Zhou, Vicky W., Yuh, Tiffany, Bulyk, Martha L.
Published 2014

Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex

by Siggers, Trevor, Duyzend, Michael H., Reddy, Jessica, Khan, Sidra, Bulyk, Martha L.
Published 2013

DNA-binding specificity changes in the evolution of forkhead transcription factors

by Nakagawa, So, Gisselbrecht, Stephen S., Rogers, Julia M., Hartl, Daniel L., Bulyk, Martha L.
Published 2014

DNA Sequence Preferences of Transcriptional Activators Correlate More Strongly than Repressors with Nucleosomes

by Charoensawan, Varodom, Janga, Sarath Chandra, Bulyk, Martha L., Babu, M. Madan, Teichmann, Sarah A
Published 2013

Using protein design algorithms to understand the molecular basis of disease caused by protein-DNA interactions: the Pax6 example

by Alibes, Andreu, Nadra, Alejandro D., De Masi, Federico, Bulyk, Martha L., Serrano, Luis, Stricher, Francois
Published 2012

Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights

by Gordan, Raluca, Zhu, Cong, Vedenko, Anastasia, Bulyk, Martha L., Murphy, Kevin F., McCord, Rachel P.
Published 2012

Contribution of Distinct Homeodomain DNA Binding Specificities to Drosophila Embryonic Mesodermal Cell-Specific Gene Expression Programs

by Busser, Brian W., Gisselbrecht, Stephen S., Shokri, Leila, Tansey, Terese R., Gamble, Caitlin E., Bulyk, Martha L., Michelson, Alan M.
Published 2013

Context influences on TALE-DNA binding revealed by quantitative profiling

by Rogers, Julia M., Reyon, Deepak, Sander, Jeffry D., Kellis, Manolis, Joung, J. Keith, Bulyk, Martha L., Barrera, Luis Alberto
Published 2015

Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants

by Masi, Federico De, Grove, Christian A., Vedenko, Anastasia, Alibes, Andreu, Gisselbrecht, Stephen S., Serrano, Luis, Walhout, Albertha J. M., Bulyk, Martha L.
Published 2012

Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits

by Wong, Daniel, Teixeira, Ana, Oikonomopoulos, Spyros, Humburg, Peter, Lone, Imtiaz N., Saliba, David, Siggers, Trevor, Bulyk, Martha L., Angelov, Dimitar, Dimitrov, Stefan, Udalova, Irina A., Ragoussis, Jiannis
Published 2012

Predicting the binding preference of transcription factors to individual DNA k-mers

by Bulyk, Martha L., Philippakis, Anthony A., Alleyne, Trevis M., Peña-Castillo, Lourdes, Badis, Gwenael, Talukder, Shaheynoor, Berger, Michael F., Gehrke, Andrew R., Morris, Quaid D., Hughes, Timothy R.
Published 2012

Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences

by Santos, Miguel A., Turinsky, Andrei L., Ong, Serene, Tsai, Jennifer, Berger, Michael F., Badis, Gwenael, Talukder, Shaheynoor, Gehrke, Andrew R., Hughes, Timothy R., Wodak, Shoshana J., Bulyk, Martha L.
Published 2012

Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network

by Busser, Brian W., Huang, Di, Rogacki, Kevin R., Lane, Elizabeth A., Shokri, Leila, Ni, Ting, Gamble, Caitlin E., Gisselbrecht, Stephen S., Zhu, Jun, Bulyk, Martha L., Ovcharenko, Ivan, Michelson, Alan M.
Published 2013

An Evolutionarily Conserved Enhancer Regulates Bmp4 Expression in Developing Incisor and Limb Bud

by Jumlongras, Dolrudee, Lachke, Salil A., O'Connell, Daniel J., Aboukhalil, Anton, Li, Xiao, Choe, Sung E., Ho, Joshua W. K., Turbe-Doan, Annick, Robertson, Erin A., Olsen, Bjorn R., Bulyk, Martha L., Amendt, Brad A., Maas, Richard L.
Published 2012