Detecting long non-coding RNA biomarkers in prostate cancer liquid biopsies: Hype or hope?

by Hetty Helsmoortel, Celine Everaert, Nicolaas Lumen, Piet Ost, Jo Vandesompele
Published 2018-06-01

SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups

by Celine Everaert, Pieter-Jan Volders, Annelien Morlion, Olivier Thas, Pieter Mestdagh
Published 2020-02-01

Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data

by Alemu Takele Assefa, Katrijn De Paepe, Celine Everaert, Pieter Mestdagh, Olivier Thas, Jo Vandesompele
Published 2018-07-01

TFutils: Data structures for transcription factor bioinformatics [version 2; peer review: 2 approved]

by Benjamin J. Stubbs, Shweta Gopaulakrishnan, Kimberly Glass, Nathalie Pochet, Celine Everaert, Benjamin Raby, Vincent Carey
Published 2019-05-01

Benchmarking of RNA-sequencing analysis workflows using whole-transcriptome RT-qPCR expression data

by Celine Everaert, Manuel Luypaert, Jesper L. V. Maag, Quek Xiu Cheng, Marcel E. Dinger, Jan Hellemans, Pieter Mestdagh
Published 2017-05-01

Zipper plot: visualizing transcriptional activity of genomic regions

by Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh
Published 2017-05-01

Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls

by Eva Hulstaert, Anneleen Decock, Annelien Morlion, Celine Everaert, Kimberly Verniers, Justine Nuytens, Nele Nijs, Gary P. Schroth, Scott Kuersten, Stephen M. Gross, Pieter Mestdagh, Jo Vandesompele
Published 2021-06-01

The long noncoding RNA lncNB1 promotes tumorigenesis by interacting with ribosomal protein RPL35

by Pei Y. Liu, Andrew E. Tee, Giorgio Milazzo, Katherine M. Hannan, Jesper Maag, Sujanna Mondal, Bernard Atmadibrata, Nenad Bartonicek, Hui Peng, Nicholas Ho, Chelsea Mayoh, Roberto Ciaccio, Yuting Sun, Michelle J. Henderson, Jixuan Gao, Celine Everaert, Amy J. Hulme, Matthew Wong, Qing Lan, Belamy B. Cheung, Leming Shi, Jenny Y. Wang, Thorsten Simon, Matthias Fischer, Xu D. Zhang, Glenn M. Marshall, Murray D. Norris, Michelle Haber, Jo Vandesompele, Jinyan Li, Pieter Mestdagh, Ross D. Hannan, Marcel E. Dinger, Giovanni Perini, Tao Liu
Published 2019-11-01