For T Cell Receptors, Some Breakups Might Not Last Forever

by Govern, Christopher C., Chakraborty, Arup K.
Published 2015

From HIV protein sequences to viral fitness landscapes: a new paradigm for in silico vaccine design

by Ferguson, Andrew L., Chakraborty, Arup K.
Published 2013

Signaling cascades modulate the speed of signal propagation through space

by Govern, Christopher C., Chakraborty, Arup K.
Published 2010

Stochastic Responses May Allow Genetically Diverse Cell Populations to Optimize Performance with Simpler Signaling Networks

by Govern, Christopher C., Chakraborty, Arup K
Published 2013

Evolving concepts of specificity in immune reactions

by Chakraborty, Arup K, Eisen, Herman N.
Published 2017

Immunopaleontology reveals how affinity enhancement is achieved during affinity maturation of antibodies to influenza virus

by Eisen, Herman N., Chakraborty, Arup K
Published 2013

How nonuniform contact profiles of T cell receptors modulate thymic selection outcomes

by Chen, Hanrong, Chakraborty, Arup K, Kardar, Mehran
Published 2018

Statistical Physics of T-Cell Development and Pathogen Specificity

by Kosmrlj, Andrej, Kardar, Mehran, Chakraborty, Arup K
Published 2014

A simple model for how the risk of pandemics from different virus families depends on viral and human traits

by Doelger, Julia, Chakraborty, Arup K, Kardar, Mehran
Published 2022

The influence of T cell development on pathogen specificity and autoreactivity

by Kosmrlj, Andrej, Kardar, Mehran, Chakraborty, Arup K.
Published 2013

Inferring the intrinsic mutational fitness landscape of influenzalike evolving antigens from temporally ordered sequence data

by Doelger, Julia, Kardar, Mehran, Chakraborty, Arup K
Published 2022

Protein Clusters on the T Cell Surface May Suppress Spurious Early Signaling Events

by Chung, Woo, Abel, Steven M., Chakraborty, Arup K.
Published 2012

Quorum sensing allows T cells to discriminate between self and nonself

by Butler, Thomas Charles, Kardar, Mehran, Chakraborty, Arup K
Published 2014

Scaling laws describe memories of host-pathogen riposte in the HIV population

by Barton, John P., Kardar, Mehran, Chakraborty, Arup K.
Published 2015

A model for genetic and epigenetic regulatory networks identifies rare for transcription factor induced pluripotency

by Artyomov, Maxim N., Meissner, Alexander, Chakraborty, Arup K.
Published 2010

Identifying Dynamical Bottlenecks of Stochastic Transitions in Biochemical Networks

by Yang, Ming, Chakraborty, Arup K., Govern, Christopher C.
Published 2012

A Model for How Signal Duration Can Determine Distinct Outcomes of Gene Transcription Programs

by Fowler, Kevin Daniel, Kuchroo, Vijay K., Chakraborty, Arup K.
Published 2012

Stochastic effects are important in intrahost HIV evolution even when viral loads are high

by Read, Elizabeth L., Tovo-Dwyer, Allison A., Chakraborty, Arup K
Published 2013

Automatic Classification of Cellular Expression by Nonlinear Stochastic Embedding (ACCENSE)

by Shekhar, Karthik, Brodin, Petter, Davis, Mark M., Chakraborty, Arup K
Published 2014

Optimal immunization cocktails can promote induction of broadly neutralizing Abs against highly mutable pathogens

by Moore, Penny L., Shaffer, James S, Kardar, Mehran, Chakraborty, Arup K
Published 2017