PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly

by Maxime Borry, Alexander Hübner, Adam B. Rohrlach, Christina Warinner
Published 2021-07-01

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research

by Irina M. Velsko, Laurent A. F. Frantz, Alexander Herbig, Greger Larson, Christina Warinner
Published 2018-07-01

Ancient DNA analysis reveals high frequency of European lactase persistence allele (T-13910) in medieval central europe.

by Annina Krüttli, Abigail Bouwman, Gülfirde Akgül, Philippe Della Casa, Frank Rühli, Christina Warinner
Published 2014-01-01

HOPS: automated detection and authentication of pathogen DNA in archaeological remains

by Ron Hübler, Felix M. Key, Christina Warinner, Kirsten I. Bos, Johannes Krause, Alexander Herbig
Published 2019-12-01

Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion.

by Tanvi P Honap, Krithivasan Sankaranarayanan, Stephanie L Schnorr, Andrew T Ozga, Christina Warinner, Cecil M Lewis
Published 2020-01-01

Post mortem DNA degradation of human tissue experimentally mummified in salt.

by Natallia Shved, Cordula Haas, Christina Papageorgopoulou, Guelfirde Akguel, Katja Paulsen, Abigail Bouwman, Christina Warinner, Frank Rühli
Published 2014-01-01

Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer

by David Jacobson, Kathleen Moore, Camille Gunderson, Michelle Rowland, Rita Austin, Tanvi Prasad Honap, Jiawu Xu, Christina Warinner, Krithivasan Sankaranarayanan, Cecil M. Lewis Jr
Published 2021-06-01

Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage

by Irina M. Velsko, James A. Fellows Yates, Franziska Aron, Richard W. Hagan, Laurent A. F. Frantz, Louise Loe, Juan Bautista Rodriguez Martinez, Eros Chaves, Chris Gosden, Greger Larson, Christina Warinner
Published 2019-07-01

Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt

by Simone Rampelli, Silvia Turroni, Carolina Mallol, Cristo Hernandez, Bertila Galván, Ainara Sistiaga, Elena Biagi, Annalisa Astolfi, Patrizia Brigidi, Stefano Benazzi, Cecil M. Lewis, Christina Warinner, Courtney A. Hofman, Stephanie L. Schnorr, Marco Candela
Published 2021-02-01

"The dead shall be raised": Multidisciplinary analysis of human skeletons reveals complexity in 19th century immigrant socioeconomic history and identity in New Haven, Connecticut.

by Gary P Aronsen, Lars Fehren-Schmitz, John Krigbaum, George D Kamenov, Gerald J Conlogue, Christina Warinner, Andrew T Ozga, Krithivasan Sankaranarayanan, Anthony Griego, Daniel W DeLuca, Howard T Eckels, Romuald K Byczkiewicz, Tania Grgurich, Natalie A Pelletier, Sarah A Brownlee, Ana Marichal, Kylie Williamson, Yukiko Tonoike, Nicholas F Bellantoni
Published 2019-01-01

Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir

by James A. Fellows Yates, Aida Andrades Valtueña, Åshild J. Vågene, Becky Cribdon, Irina M. Velsko, Maxime Borry, Miriam J. Bravo-Lopez, Antonio Fernandez-Guerra, Eleanor J. Green, Shreya L. Ramachandran, Peter D. Heintzman, Maria A. Spyrou, Alexander Hübner, Abigail S. Gancz, Jessica Hider, Aurora F. Allshouse, Valentina Zaro, Christina Warinner
Published 2021-01-01

CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content

by Maxime Borry, Bryan Cordova, Angela Perri, Marsha Wibowo, Tanvi Prasad Honap, Jada Ko, Jie Yu, Kate Britton, Linus Girdland-Flink, Robert C. Power, Ingelise Stuijts, Domingo C. Salazar-García, Courtney Hofman, Richard Hagan, Thérèse Samdapawindé Kagoné, Nicolas Meda, Helene Carabin, David Jacobson, Karl Reinhard, Cecil Lewis, Aleksandar Kostic, Choongwon Jeong, Alexander Herbig, Alexander Hübner, Christina Warinner
Published 2020-04-01