D-GENIES: dot plot large genomes in an interactive, efficient and simple way

by Floréal Cabanettes, Christophe Klopp
Published 2018-06-01

Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation

by Anja Striberny, Even H. Jørgensen, Christophe Klopp, Elodie Magnanou
Published 2019-06-01

Draft genome sequence and characterization of commensal Escherichia coli strain BG1 isolated from bovine gastro-intestinal tract

by Audrey Segura, Pauline Auffret, Christophe Klopp, Yolande Bertin, Evelyne Forano
Published 2017-10-01

RNA-Seq transcriptome data of undifferentiated and differentiated gonads of Siberian sturgeon

by Christophe Klopp, André Lasalle, Santiago Di Landro, Denise Vizziano-Cantonnet
Published 2020-08-01

Whole-genome sequencing of Aspergillus tubingensis G131 and overview of its secondary metabolism potential

by Elodie Choque, Christophe Klopp, Sophie Valiere, José Raynal, Florence Mathieu
Published 2018-03-01

Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

by Cédric Cabau, Frédéric Escudié, Anis Djari, Yann Guiguen, Julien Bobe, Christophe Klopp
Published 2017-02-01

Multi-tissue Siberian sturgeon RNA sequencing data

by Christophe Klopp, Cédric Cabau, André Lasalle, Santiago Di Landro, Gonzalo Greif, Denise Vizziano-Cantonnet
Published 2020-08-01

One complete and three draft genome sequences of four Brochothrix thermosphacta strains, CD 337, TAP 175, BSAS1 3 and EBP 3070

by Nassima Illikoud, Christophe Klopp, Alain Roulet, Olivier Bouchez, Nathalie Marsaud, Emmanuel Jaffrès, Monique Zagorec
Published 2018-10-01

The role of rhizobial (NifV) and plant (FEN1) homocitrate synthases in Aeschynomene/photosynthetic Bradyrhizobium symbiosis

by Nico Nouwen, Jean-François Arrighi, Fabienne Cartieaux, Clémence Chaintreuil, Djamel Gully, Christophe Klopp, Eric Giraud
Published 2017-03-01

RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed

by Frédéric Hérault, Magalie Houée-Bigot, Elisabeth Baéza, Olivier Bouchez, Diane Esquerré, Christophe Klopp, Christian Diot
Published 2019-01-01

Targeted genomic enrichment and sequencing of CyHV-3 from carp tissues confirms low nucleotide diversity and mixed genotype infections

by Saliha Hammoumi, Tatiana Vallaeys, Ayi Santika, Philippe Leleux, Ewa Borzym, Christophe Klopp, Jean-Christophe Avarre
Published 2016-09-01

Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle

by Fanny Mondet, Andrea Rau, Christophe Klopp, Marine Rohmer, Dany Severac, Yves Le Conte, Cedric Alaux
Published 2018-05-01

RNAbrowse: RNA-Seq de novo assembly results browser.

by Jérôme Mariette, Céline Noirot, Ibounyamine Nabihoudine, Philippe Bardou, Claire Hoede, Anis Djari, Cédric Cabau, Christophe Klopp
Published 2014-01-01

Re-sequencing data for refining candidate genes and polymorphisms in QTL regions affecting adiposity in chicken.

by Pierre-François Roux, Morgane Boutin, Colette Désert, Anis Djari, Diane Esquerré, Christophe Klopp, Sandrine Lagarrigue, Olivier Demeure
Published 2014-01-01

Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents

by Audrey Segura, Marine Bertoni, Pauline Auffret, Christophe Klopp, Olivier Bouchez, Clémence Genthon, Alexandra Durand, Yolande Bertin, Evelyne Forano
Published 2018-10-01

Transcriptome Profiling of the Pacific Oyster <i>Crassostrea gigas</i> Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides

by Emilie Réalis-Doyelle, Julie Schwartz, Cédric Cabau, Lorane Le Franc, Benoit Bernay, Guillaume Rivière, Christophe Klopp, Pascal Favrel
Published 2021-08-01

MINTIA: a metagenomic INserT integrated assembly and annotation tool

by Philippe Bardou, Sandrine Laguerre, Sarah Maman Haddad, Sabrina Legoueix Rodriguez, Elisabeth Laville, Claire Dumon, Gabrielle Potocki-Veronese, Christophe Klopp
Published 2021-09-01

A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife.

by Maria Razzauti, Maxime Galan, Maria Bernard, Sarah Maman, Christophe Klopp, Nathalie Charbonnel, Muriel Vayssier-Taussat, Marc Eloit, Jean-François Cosson
Published 2015-01-01

Viruses in the Invasive Hornet <i>Vespa velutina</i>

by Anne Dalmon, Philippe Gayral, Damien Decante, Christophe Klopp, Diane Bigot, Maxime Thomasson, Elisabeth A Herniou, Cédric Alaux, Yves Le Conte
Published 2019-11-01

Discovery of carbamate degrading enzymes by functional metagenomics.

by Lisa Ufarté, Elisabeth Laville, Sophie Duquesne, Diego Morgavi, Patrick Robe, Christophe Klopp, Angeline Rizzo, Sandra Pizzut-Serin, Gabrielle Potocki-Veronese
Published 2017-01-01