From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes

by Clémence Frioux, Dipali Singh, Tamas Korcsmaros, Falk Hildebrand
Published 2020-01-01

Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species

by Arnaud Belcour, Clémence Frioux, Méziane Aite, Anthony Bretaudeau, Falk Hildebrand, Anne Siegel
Published 2020-12-01

Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines

by Elham Karimi, Enora Geslain, Arnaud Belcour, Clémence Frioux, Méziane Aïte, Anne Siegel, Erwan Corre, Simon M. Dittami
Published 2021-05-01

Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks

by Julie Laniau, Clémence Frioux, Jacques Nicolas, Caroline Baroukh, Maria-Paz Cortes, Jeanne Got, Camille Trottier, Damien Eveillard, Anne Siegel
Published 2017-10-01

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks.

by Sylvain Prigent, Clémence Frioux, Simon M Dittami, Sven Thiele, Abdelhalim Larhlimi, Guillaume Collet, Fabien Gutknecht, Jeanne Got, Damien Eveillard, Jérémie Bourdon, Frédéric Plewniak, Thierry Tonon, Anne Siegel
Published 2017-01-01

Metabolic Complementarity Between a Brown Alga and Associated Cultivable Bacteria Provide Indications of Beneficial Interactions

by Bertille Burgunter-Delamare, Hetty KleinJan, Clémence Frioux, Enora Fremy, Margot Wagner, Erwan Corre, Alicia Le Salver, Cédric Leroux, Catherine Leblanc, Catherine Boyen, Anne Siegel, Simon M. Dittami
Published 2020-02-01

Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae <i>Saccharina japonica</i> and <i>Cladosiphon okamuranus</i>

by Delphine Nègre, Méziane Aite, Arnaud Belcour, Clémence Frioux, Loraine Brillet-Guéguen, Xi Liu, Philippe Bordron, Olivier Godfroy, Agnieszka P. Lipinska, Catherine Leblanc, Anne Siegel, Simon M. Dittami, Erwan Corre, Gabriel V. Markov
Published 2019-11-01

Traceability, reproducibility and wiki-exploration for "à-la-carte" reconstructions of genome-scale metabolic models.

by Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier, Jeanne Got, María Paz Cortés, Sebastián N Mendoza, Grégory Carrier, Olivier Dameron, Nicolas Guillaudeux, Mauricio Latorre, Nicolás Loira, Gabriel V Markov, Alejandro Maass, Anne Siegel
Published 2018-05-01