Strain profiling and epidemiology of bacterial species from metagenomic sequencing

by Davide Albanese, Claudio Donati
Published 2017-12-01

Protein homology network families reveal step-wise diversification of Type III and Type IV secretion systems.

by Duccio Medini, Antonello Covacci, Claudio Donati
Published 2006-12-01

Explaining diversity in metagenomic datasets by phylogenetic-based feature weighting.

by Davide Albanese, Carlotta De Filippo, Duccio Cavalieri, Claudio Donati
Published 2015-03-01

Pilus operon evolution in Streptococcus pneumoniae is driven by positive selection and recombination.

by Alessandro Muzzi, Monica Moschioni, Antonello Covacci, Rino Rappuoli, Claudio Donati
Published 2008-01-01

A novel computational method identifies intra- and inter-species recombination events in Staphylococcus aureus and Streptococcus pneumoniae.

by Lisa Sanguinetti, Simona Toti, Valerio Reguzzi, Fabio Bagnoli, Claudio Donati
Published 2012-01-01

PIPE-chipSAD: a pipeline for the analysis of high density arrays of bacterial transcriptomes

by Silvia Bottini, Elena Del Tordello, Luca Fagnocchi, Claudio Donati, Alessandro Muzzi
Published 2016-12-01

Large scale genome reconstructions illuminate Wolbachia evolution

by Matthias Scholz, Davide Albanese, Kieran Tuohy, Claudio Donati, Nicola Segata, Omar Rota-Stabelli
Published 2020-10-01

The Gut Microbiota Communities of Wild Arboreal and Ground-Feeding Tropical Primates Are Affected Differently by Habitat Disturbance

by Claudia Barelli, Davide Albanese, Rebecca M. Stumpf, Abigail Asangba, Claudio Donati, Francesco Rovero, Heidi C. Hauffe
Published 2020-05-01

Sequence analysis of 96 genomic regions identifies distinct evolutionary lineages within CC156, the largest Streptococcus pneumoniae clonal complex in the MLST database.

by Monica Moschioni, Morena Lo Sapio, Giovanni Crisafulli, Giulia Torricelli, Silvia Guidotti, Alessandro Muzzi, Michèle A Barocchi, Claudio Donati
Published 2013-01-01

Microbiome of vineyard soils is shaped by geography and management

by Emanuela Coller, Alessandro Cestaro, Roberto Zanzotti, Daniela Bertoldi, Massimo Pindo, Simone Larger, Davide Albanese, Enzo Mescalchin, Claudio Donati
Published 2019-11-01

Pre-Cambrian roots of novel Antarctic cryptoendolithic bacterial lineages

by Davide Albanese, Claudia Coleine, Omar Rota-Stabelli, Silvano Onofri, Susannah G. Tringe, Jason E. Stajich, Laura Selbmann, Claudio Donati
Published 2021-03-01

Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System

by Yousri Abdelhafiz, Jorge M. O. Fernandes, Simone Larger, Davide Albanese, Claudio Donati, Omid Jafari, Omid Jafari, Artem V. Nedoluzhko, Viswanath Kiron
Published 2021-09-01

Persistence and Microevolution of Pseudomonas aeruginosa in the Cystic Fibrosis Lung: A Single-Patient Longitudinal Genomic Study

by Irene Bianconi, Silvia D’Arcangelo, Alfonso Esposito, Mattia Benedet, Elena Piffer, Grazia Dinnella, Paola Gualdi, Michele Schinella, Ermanno Baldo, Claudio Donati, Olivier Jousson
Published 2019-01-01

Intestinal Candida parapsilosis isolates from Rett syndrome subjects bear potential virulent traits and capacity to persist within the host

by Francesco Strati, Antonio Calabrò, Claudio Donati, Claudio De Felice, Joussef Hayek, Olivier Jousson, Silvia Leoncini, Daniela Renzi, Lisa Rizzetto, Carlotta De Filippo, Duccio Cavalieri
Published 2018-05-01

Raw milk and fecal microbiota of commercial Alpine dairy cows varies with herd, fat content and diet.

by Francesca Albonico, Claudia Barelli, Davide Albanese, Mattia Manica, Erika Partel, Fausta Rosso, Silvia Ripellino, Massimo Pindo, Claudio Donati, Alfonso Zecconi, Michele Mortarino, Heidi C Hauffe
Published 2020-01-01

The Streptococcus pneumoniae pilus-1 displays a biphasic expression pattern.

by Gabriella De Angelis, Monica Moschioni, Alessandro Muzzi, Alfredo Pezzicoli, Stefano Censini, Isabel Delany, Morena Lo Sapio, Antonia Sinisi, Claudio Donati, Vega Masignani, Michèle A Barocchi
Published 2011-01-01

Age and gender affect the composition of fungal population of the human gastrointestinal tract

by Francesco Strati, Francesco Strati, Monica Di Paola, Irene Stefanini, Davide Albanese, Lisa Rizzetto, Paolo Lionetti, Antonio Calabrò, Olivier Jousson, Claudio Donati, Duccio Cavalieri, Duccio Cavalieri, Carlotta De Filippo
Published 2016-08-01

Alteration of fecal microbiota profiles in juvenile idiopathic arthritis. Associations with HLA-B27 allele and disease status.

by Monica Di Paola, Duccio Cavalieri, Davide Albanese, Claudio Donati, Maddalena Sordo, Massimo Pindo, Ilaria Pagnini, Teresa Giani, Gabriele Simonini, Gabriele Simonini, Alessia Paladini, Paolo Lionetti, Carlotta De Filippo, Rolando Cimaz, Rolando Cimaz
Published 2016-10-01

Genomic analysis reveals the molecular basis for capsule loss in the group B Streptococcus population.

by Roberto Rosini, Edmondo Campisi, Matteo De Chiara, Hervé Tettelin, Daniela Rinaudo, Chiara Toniolo, Matteo Metruccio, Silvia Guidotti, Uffe B Skov Sørensen, Mogens Kilian, DEVANI Consortium, Mario Ramirez, Robert Janulczyk, Claudio Donati, Guido Grandi, Immaculada Margarit
Published 2015-01-01

Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES

by Laura Selbmann, Zsigmond Benkő, Claudia Coleine, Sybren de Hoog, Claudio Donati, Irina Druzhinina, Tamás Emri, Cassie L. Ettinger, Amy S. Gladfelter, Anna A. Gorbushina, Igor V. Grigoriev, Martin Grube, Nina Gunde-Cimerman, Zsolt Ákos Karányi, Beatrix Kocsis, Tania Kubressoian, Ida Miklós, Márton Miskei, Lucia Muggia, Trent Northen, Monika Novak-Babič, Christa Pennacchio, Walter P. Pfliegler, Istvàn Pòcsi, Valeria Prigione, Meritxell Riquelme, Nicola Segata, Julia Schumacher, Ekaterina Shelest, Katja Sterflinger, Donatella Tesei, Jana M. U’Ren, Giovanna C. Varese, Xabier Vázquez-Campos, Vania A. Vicente, Emanuel M. Souza, Polona Zalar, Allison K. Walker, Jason E. Stajich
Published 2020-12-01