Critical evaluation of short, long, and hybrid assembly for contextual analysis of antibiotic resistance genes in complex environmental metagenomes

by Connor L. Brown, Ishi M. Keenum, Dongjuan Dai, Liqing Zhang, Peter J. Vikesland, Amy Pruden
Published 2021-02-01

Whole genome sequence analysis reveals the broad distribution of the RtxA type 1 secretion system and four novel putative type 1 secretion systems throughout the Legionella genus.

by Connor L Brown, Emily Garner, Guillaume Jospin, David A Coil, David O Schwake, Jonathan A Eisen, Biswarup Mukhopadhyay, Amy J Pruden
Published 2020-01-01

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016

by Emily Garner, Connor L. Brown, David Otto Schwake, William J. Rhoads, Gustavo Arango-Argoty, Liqing Zhang, Guillaume Jospin, David A. Coil, Jonathan A. Eisen, Marc A. Edwards, Amy Pruden
Published 2019-11-01