Distinct Microbial Assemblage Structure and Archaeal Diversity in Sediments of Arctic Thermokarst Lakes Differing in Methane Sources

by Paula B. Matheus Carnevali, Craig W. Herbold, Kevin P. Hand, John C. Priscu, Alison E. Murray
Published 2018-06-01

Evaluation of Primers Targeting the Diazotroph Functional Gene and Development of NifMAP – A Bioinformatics Pipeline for Analyzing nifH Amplicon Data

by Roey Angel, Maximilian Nepel, Christopher Panhölzl, Hannes Schmidt, Craig W. Herbold, Stephanie A. Eichorst, Dagmar Woebken
Published 2018-04-01

Conversion of Rutin, a Prevalent Dietary Flavonol, by the Human Gut Microbiota

by Alessandra Riva, Ditta Kolimár, Andreas Spittler, Lukas Wisgrill, Craig W. Herbold, László Abrankó, David Berry, David Berry
Published 2020-12-01

Benthic microbial communities of coastal terrestrial and ice shelf Antarctic meltwater ponds

by Stephen David James Archer, Ian R McDonald, Craig W Herbold, Charles K. Lee, Craig Stephen Cary
Published 2015-05-01

Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems

by Yuchun Yang, Holger Daims, Yang Liu, Craig W. Herbold, Petra Pjevac, Jih-Gaw Lin, Meng Li, Ji-Dong Gu
Published 2020-03-01

A Bioinformatics Guide to Plant Microbiome Analysis

by Rares Lucaciu, Claus Pelikan, Samuel M. Gerner, Christos Zioutis, Stephan Köstlbacher, Harald Marx, Craig W. Herbold, Hannes Schmidt, Thomas Rattei
Published 2019-10-01

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing.

by Charles K Lee, Craig W Herbold, Shawn W Polson, K Eric Wommack, Shannon J Williamson, Ian R McDonald, S Craig Cary
Published 2012-01-01

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

by Craig W. Herbold, Claus ePelikan, Orest eKuzyk, Bela eHausmann, Roey eAngel, David eBerry, Alexander eLoy
Published 2015-07-01

Ecological memory of recurrent drought modifies soil processes via changes in soil microbial community

by Alberto Canarini, Hannes Schmidt, Lucia Fuchslueger, Victoria Martin, Craig W. Herbold, David Zezula, Philipp Gündler, Roland Hasibeder, Marina Jecmenica, Michael Bahn, Andreas Richter
Published 2021-09-01

Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valle...

by Anne Daebeler, Craig W. Herbold, Julia Vierheilig, Christopher J. Sedlacek, Petra Pjevac, Mads Albertsen, Rasmus H. Kirkegaard, José R. de la Torre, Holger Daims, Michael Wagner
Published 2018-02-01

Bottled aqua incognita: microbiota assembly and dissolved organic matter diversity in natural mineral waters

by Celine C. Lesaulnier, Craig W. Herbold, Claus Pelikan, David Berry, Cédric Gérard, Xavier Le Coz, Sophie Gagnot, Jutta Niggemann, Thorsten Dittmar, Gabriel A. Singer, Alexander Loy
Published 2017-09-01

Genomic Insights Into the Acid Adaptation of Novel Methanotrophs Enriched From Acidic Forest Soils

by Ngoc-Loi Nguyen, Woon-Jong Yu, Joo-Han Gwak, So-Jeong Kim, Soo-Je Park, Craig W. Herbold, Jong-Geol Kim, Man-Young Jung, Sung-Keun Rhee
Published 2018-08-01

An Economical and Flexible Dual Barcoding, Two-Step PCR Approach for Highly Multiplexed Amplicon Sequencing

by Petra Pjevac, Petra Pjevac, Bela Hausmann, Bela Hausmann, Jasmin Schwarz, Jasmin Schwarz, Gudrun Kohl, Gudrun Kohl, Craig W. Herbold, Alexander Loy, Alexander Loy, David Berry, David Berry
Published 2021-05-01

AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment

by Petra Pjevac, Clemens Schauberger, Lianna Poghosyan, Craig W. Herbold, Maartje A. H. J. van Kessel, Anne Daebeler, Michaela Steinberger, Mike S. M. Jetten, Sebastian Lücker, Michael Wagner, Holger Daims
Published 2017-08-01

Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

by Katharina Kitzinger, Hannah K. Marchant, Laura A. Bristow, Craig W. Herbold, Cory C. Padilla, Abiel T. Kidane, Sten Littmann, Holger Daims, Petra Pjevac, Frank J. Stewart, Michael Wagner, Marcel M. M. Kuypers
Published 2020-02-01

Glacial Runoff Promotes Deep Burial of Sulfur Cycling-Associated Microorganisms in Marine Sediments

by Claus Pelikan, Claus Pelikan, Marion Jaussi, Kenneth Wasmund, Kenneth Wasmund, Marit-Solveig Seidenkrantz, Christof Pearce, Zou Zou Anna Kuzyk, Craig W. Herbold, Hans Røy, Kasper Urup Kjeldsen, Alexander Loy, Alexander Loy
Published 2019-11-01

Rational design of a microbial consortium of mucosal sugar utilizers reduces Clostridiodes difficile colonization

by Fátima C. Pereira, Kenneth Wasmund, Iva Cobankovic, Nico Jehmlich, Craig W. Herbold, Kang Soo Lee, Barbara Sziranyi, Cornelia Vesely, Thomas Decker, Roman Stocker, Benedikt Warth, Martin von Bergen, Michael Wagner, David Berry
Published 2020-10-01

Bacillus simplex—A Little Known PGPB with Anti-Fungal Activity—Alters Pea Legume Root Architecture and Nodule Morphology When Coinoculated with Rhizobium leguminosarum bv. viciae...

by Ann M. Hirsch, Darleen A. DeMason, Erin R. Sanders, Andrew Diener, Kayoko Hanamoto, William Villella, Janahan A. Vijanderan, Nancy A. Fujishige, Maskit Maymon, Craig W. Herbold, Irma Ortiz, Allison R. Schwartz
Published 2013-09-01

Gilbert’s Syndrome and the Gut Microbiota – Insights From the Case-Control BILIHEALTH Study

by Patrick A. Zöhrer, Patrick A. Zöhrer, Claudia A. Hana, Nazlisadat Seyed Khoei, Nazlisadat Seyed Khoei, Christine Mölzer, Marlies Hörmann-Wallner, Anela Tosevska, Anela Tosevska, Anela Tosevska, Daniel Doberer, Rodrig Marculescu, Andrew C. Bulmer, Craig W. Herbold, David Berry, David Berry, Karl-Heinz Wagner, Karl-Heinz Wagner
Published 2021-09-01