Characterization of the definitive classical calpain family of vertebrates using phylogenetic, evolutionary and expression analyses

by Daniel J. Macqueen, Alexander H. Wilcox
Published 2014-01-01

An update on MyoD evolution in teleosts and a proposed consensus nomenclature to accommodate the tetraploidization of different vertebrate genomes.

by Daniel J Macqueen, Ian A Johnston
Published 2008-01-01

Insulin-Like Growth Factor-Binding Proteins of Teleost Fishes

by Daniel Garcia de la Serrana, Daniel J. Macqueen
Published 2018-03-01

Phylotranscriptomics suggests the jawed vertebrate ancestor could generate diverse helper and regulatory T cell subsets

by Anthony K. Redmond, Daniel J. Macqueen, Helen Dooley
Published 2018-11-01

Phylogenetic Reclassification of Vertebrate Melatonin Receptors To Include Mel1d

by Elsa Denker, Lars O. E. Ebbesson, David G. Hazlerigg, Daniel J. Macqueen
Published 2019-10-01

Discovery of All Three Types in Cartilaginous Fishes Enables Phylogenetic Resolution of the Origins and Evolution of Interferons

by Anthony K. Redmond, Anthony K. Redmond, Anthony K. Redmond, Jun Zou, Jun Zou, Jun Zou, Christopher J. Secombes, Christopher J. Secombes, Daniel J. Macqueen, Daniel J. Macqueen, Helen Dooley, Helen Dooley, Helen Dooley
Published 2019-07-01

Effect of growth rate on transcriptomic responses to immune stimulation in wild-type, domesticated, and GH-transgenic coho salmon

by Jin-Hyoung Kim, Daniel J. Macqueen, James R. Winton, John D. Hansen, Hyun Park, Robert H. Devlin
Published 2019-12-01

Genome Sequencing of SAV3 Reveals Repeated Seeding Events of Viral Strains in Norwegian Aquaculture

by Michael D. Gallagher, Michael D. Gallagher, Marius Karlsen, Elin Petterson, Øyvind Haugland, Iveta Matejusova, Daniel J. Macqueen
Published 2020-04-01

Plasma Proteome Responses in Salmonid Fish Following Immunization

by Fiona K. Bakke, Milena M. Monte, David A. Stead, Dwight R. Causey, Alex Douglas, Daniel J. Macqueen, Helen Dooley
Published 2020-10-01

High-throughput proteomic profiling of the fish liver following bacterial infection

by Dwight R Causey, Moritz A N Pohl, David A Stead, Samuel A M Martin, Christopher J Secombes, Daniel J Macqueen
Published 2018-10-01

SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes

by Teshome Dagne Mulugeta, Torfinn Nome, Thu-Hien To, Manu Kumar Gundappa, Daniel J. Macqueen, Dag Inge Våge, Simen Rød Sandve, Torgeir R. Hvidsten
Published 2019-09-01

Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

by Fiona M. Robertson, Manu Kumar Gundappa, Fabian Grammes, Torgeir R. Hvidsten, Anthony K. Redmond, Sigbjørn Lien, Samuel A. M. Martin, Peter W. H. Holland, Simen R. Sandve, Daniel J. Macqueen
Published 2017-06-01

Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication

by Gareth B. Gillard, Lars Grønvold, Line L. Røsæg, Matilde Mengkrog Holen, Øystein Monsen, Ben F. Koop, Eric B. Rondeau, Manu Kumar Gundappa, John Mendoza, Daniel J. Macqueen, Rori V. Rohlfs, Simen R. Sandve, Torgeir R. Hvidsten
Published 2021-04-01

The structural variation landscape in 492 Atlantic salmon genomes

by Alicia C. Bertolotti, Ryan M. Layer, Manu Kumar Gundappa, Michael D. Gallagher, Ege Pehlivanoglu, Torfinn Nome, Diego Robledo, Matthew P. Kent, Line L. Røsæg, Matilde M. Holen, Teshome D. Mulugeta, Thomas J. Ashton, Kjetil Hindar, Harald Sægrov, Bjørn Florø-Larsen, Jaakko Erkinaro, Craig R. Primmer, Louis Bernatchez, Samuel A. M. Martin, Ian A. Johnston, Simen R. Sandve, Sigbjørn Lien, Daniel J. Macqueen
Published 2020-10-01

Functional Annotation of All Salmonid Genomes (FAASG): an international initiative supporting future salmonid research, conservation and aquaculture

by Daniel J. Macqueen, Craig R. Primmer, Ross D. Houston, Barbara F. Nowak, Louis Bernatchez, Steinar Bergseth, William S. Davidson, Cristian Gallardo-Escárate, Tom Goldammer, Yann Guiguen, Patricia Iturra, James W. Kijas, Ben F. Koop, Sigbjørn Lien, Alejandro Maass, Samuel A. M. Martin, Philip McGinnity, Martin Montecino, Kerry A. Naish, Krista M. Nichols, Kristinn Ólafsson, Stig W. Omholt, Yniv Palti, Graham S. Plastow, Caird E. Rexroad, Matthew L. Rise, Rachael J. Ritchie, Simen R. Sandve, Patricia M. Schulte, Alfredo Tello, Rodrigo Vidal, Jon Olav Vik, Anna Wargelius, José Manuel Yáñez, The FAASG Consortium
Published 2017-06-01