An introduction to the maximum entropy approach and its application to inference problems in biology

by Andrea De Martino, Daniele De Martino
Published 2018-04-01

Uniform sampling of steady states in metabolic networks: heterogeneous scales and rounding.

by Daniele De Martino, Matteo Mori, Valerio Parisi
Published 2015-01-01

Identifying all moiety conservation laws in genome-scale metabolic networks.

by Andrea De Martino, Daniele De Martino, Roberto Mulet, Andrea Pagnani
Published 2014-01-01

A scalable algorithm to explore the Gibbs energy landscape of genome-scale metabolic networks.

by Daniele De Martino, Matteo Figliuzzi, Andrea De Martino, Enzo Marinari
Published 2012-01-01

Reaction networks as systems for resource allocation: a variational principle for their non-equilibrium steady states.

by Andrea De Martino, Daniele De Martino, Roberto Mulet, Guido Uguzzoni
Published 2012-01-01

Counting and Correcting Thermodynamically Infeasible Flux Cycles in Genome-Scale Metabolic Networks

by Andrea De Martino, Enzo Marinari, Daniele De Martino, Fabrizio Capuani, Matteo Mori
Published 2013-10-01

Statistical mechanics for metabolic networks during steady state growth

by Daniele De Martino, Anna MC Andersson, Tobias Bergmiller, Călin C. Guet, Gašper Tkačik
Published 2018-07-01