Adaptive Multiview Nonnegative Matrix Factorization Algorithm for Integration of Multimodal Biomedical Data

by Bisakha Ray, Wenke Liu, David Fenyö
Published 2017-08-01

Predicting endometrial cancer subtypes and molecular features from histopathology images using multi-resolution deep learning models

by Runyu Hong, Wenke Liu, Deborah DeLair, Narges Razavian, David Fenyö
Published 2021-09-01

Diversity of Functionally Distinct Clonal Sets of Human Conventional Memory B Cells That Bind Staphylococcal Protein A

by Emily E. Radke, Emily E. Radke, Zhi Li, Zhi Li, David N. Hernandez, Hanane El Bannoudi, Sergei L. Kosakovsky Pond, Bo Shopsin, Peter Lopez, David Fenyö, David Fenyö, Gregg J. Silverman
Published 2021-04-01

RIP-seq reveals LINE-1 ORF1p association with p-body enriched mRNAs

by Erica M. Briggs, Wilson McKerrow, Paolo Mita, Jef D. Boeke, Susan K. Logan, David Fenyö
Published 2021-02-01

A predictive model for vertebrate bone identification from collagen using proteomic mass spectrometry

by Heyi Yang, Erin R. Butler, Samantha A. Monier, Jennifer Teubl, David Fenyö, Beatrix Ueberheide, Donald Siegel
Published 2021-05-01

Spatiotemporal dynamics of homologous recombination repair at single collapsed replication forks

by Donna R. Whelan, Wei Ting C. Lee, Yandong Yin, Dylan M. Ofri, Keria Bermudez-Hernandez, Sarah Keegan, David Fenyo, Eli Rothenberg
Published 2018-09-01

UXT is required for spermatogenesis in mice.

by Eric D Schafler, Phillip A Thomas, Susan Ha, Yu Wang, Keria Bermudez-Hernandez, Zuojian Tang, David Fenyö, Margarita Vigodner, Susan K Logan
Published 2018-01-01

Listeriomics: an Interactive Web Platform for Systems Biology of Listeria

by Christophe Bécavin, Mikael Koutero, Nicolas Tchitchek, Franck Cerutti, Pierre Lechat, Nicolas Maillet, Claire Hoede, Héélééène Chiapello, Christine Gaspin, Pascale Cossart, David Fenyo
Published 2017-03-01

A Complex Systems Approach to Causal Discovery in Psychiatry.

by Glenn N Saxe, Alexander Statnikov, David Fenyo, Jiwen Ren, Zhiguo Li, Meera Prasad, Dennis Wall, Nora Bergman, Ernestine C Briggs, Constantin Aliferis
Published 2016-01-01

The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data

by Gerben Menschaert, Xiaojing Wang, Andrew R. Jones, Fawaz Ghali, David Fenyö, Volodimir Olexiouk, Bing Zhang, Eric W. Deutsch, Tobias Ternent, Juan Antonio Vizcaíno
Published 2018-01-01

LINE-1 protein localization and functional dynamics during the cell cycle

by Paolo Mita, Aleksandra Wudzinska, Xiaoji Sun, Joshua Andrade, Shruti Nayak, David J Kahler, Sana Badri, John LaCava, Beatrix Ueberheide, Chi Y Yun, David Fenyö, Jef D Boeke
Published 2018-01-01

Strategy for identifying dendritic cell-processed CD4+ T cell epitopes from the HIV gag p24 protein.

by Leonia Bozzacco, Haiqiang Yu, Jörn Dengjel, Christine Trumpfheller, Henry A Zebroski, Nawei Zhang, Victoria Küttner, Beatrix M Ueberheide, Haiteng Deng, Brian T Chait, Ralph M Steinman, Svetlana Mojsov, David Fenyö
Published 2012-01-01

Erratum: Nanoscale visualization of functional adhesion/excitability nodes at the intercalated disc

by Alejandra Leo-Macias, Esperanza Agullo-Pascual, Jose L Sanchez-Alonso, Sarah Keegan, Xianming Lin, Tatiana Arcos, Feng-Xia-Liang, Yuri E Korchev, Julia Gorelik, David Fenyö, Eli Rothenberg, Mario Delmar
Published 2016-02-01

The ULK1-FBXW5-SEC23B nexus controls autophagy

by Yeon-Tae Jeong, Daniele Simoneschi, Sarah Keegan, David Melville, Natalia S Adler, Anita Saraf, Laurence Florens, Michael P Washburn, Claudio N Cavasotto, David Fenyö, Ana Maria Cuervo, Mario Rossi, Michele Pagano
Published 2018-12-01

Nanoscale visualization of functional adhesion/excitability nodes at the intercalated disc

by Alejandra Leo-Macias, Esperanza Agullo-Pascual, Jose L. Sanchez-Alonso, Sarah Keegan, Xianming Lin, Tatiana Arcos, Feng-Xia-Liang, Yuri E. Korchev, Julia Gorelik, David Fenyö, Eli Rothenberg, Mario Delmar
Published 2016-01-01

Macrophage-derived netrin-1 promotes abdominal aortic aneurysm formation by activating MMP3 in vascular smooth muscle cells

by Tarik Hadi, Ludovic Boytard, Michele Silvestro, Dornazsadat Alebrahim, Samson Jacob, Jordyn Feinstein, Krista Barone, Wes Spiro, Susan Hutchison, Russell Simon, Debra Rateri, Florence Pinet, David Fenyo, Mark Adelman, Kathryn J. Moore, Holger K. Eltzschig, Alan Daugherty, Bhama Ramkhelawon
Published 2018-11-01

Transposon insertion profiling by sequencing (TIPseq) for mapping LINE-1 insertions in the human genome

by Jared P. Steranka, Zuojian Tang, Mark Grivainis, Cheng Ran Lisa Huang, Lindsay M. Payer, Fernanda O. R. Rego, Thiago Luiz Araujo Miller, Pedro A. F. Galante, Sitharam Ramaswami, Adriana Heguy, David Fenyö, Jef D. Boeke, Kathleen H. Burns
Published 2019-03-01

Dissection of affinity captured LINE-1 macromolecular complexes

by Martin S Taylor, Ilya Altukhov, Kelly R Molloy, Paolo Mita, Hua Jiang, Emily M Adney, Aleksandra Wudzinska, Sana Badri, Dmitry Ischenko, George Eng, Kathleen H Burns, David Fenyö, Brian T Chait, Dmitry Alexeev, Michael P Rout, Jef D Boeke, John LaCava
Published 2018-01-01

LINE-1 ORF2p expression is nearly imperceptible in human cancers

by Daniel Ardeljan, Xuya Wang, Mehrnoosh Oghbaie, Martin S. Taylor, David Husband, Vikram Deshpande, Jared P. Steranka, Mikhail Gorbounov, Wan Rou Yang, Brandon Sie, H. Benjamin Larman, Hua Jiang, Kelly R. Molloy, Ilya Altukhov, Zhi Li, Wilson McKerrow, David Fenyö, Kathleen H. Burns, John LaCava
Published 2019-12-01

Spatially interacting phosphorylation sites and mutations in cancer

by Kuan-lin Huang, Adam D. Scott, Daniel Cui Zhou, Liang-Bo Wang, Amila Weerasinghe, Abdulkadir Elmas, Ruiyang Liu, Yige Wu, Michael C. Wendl, Matthew A. Wyczalkowski, Jessika Baral, Sohini Sengupta, Chin-Wen Lai, Kelly Ruggles, Samuel H. Payne, Benjamin Raphael, David Fenyö, Ken Chen, Gordon Mills, Li Ding
Published 2021-04-01