Life, the universe, and everything: an interview with David Haussler. Interviewed by Jane Gitschier.

by David Haussler
Published 2013-01-01

29 mammalian genomes reveal novel exaptations of mobile elements for likely regulatory functions in the human genome.

by Craig B Lowe, David Haussler
Published 2012-01-01

Detecting coevolution in and among protein domains.

by Chen-Hsiang Yeang, David Haussler
Published 2007-11-01

Spiking neural state machine for gait frequency entrainment in a flexible modular robot.

by Alex Spaeth, Maryam Tebyani, David Haussler, Mircea Teodorescu
Published 2020-01-01

ProTECT—Prediction of T-Cell Epitopes for Cancer Therapy

by Arjun A. Rao, Arjun A. Rao, Arjun A. Rao, Ada A. Madejska, Ada A. Madejska, Jacob Pfeil, Jacob Pfeil, Jacob Pfeil, Benedict Paten, Benedict Paten, Benedict Paten, Sofie R. Salama, Sofie R. Salama, Sofie R. Salama, David Haussler, David Haussler, David Haussler, David Haussler
Published 2020-11-01

GC-biased evolution near human accelerated regions.

by Sol Katzman, Andrew D Kern, Katherine S Pollard, Sofie R Salama, David Haussler
Published 2010-05-01

The structure of a rigorously conserved RNA element within the SARS virus genome.

by Michael P Robertson, Haller Igel, Robert Baertsch, David Haussler, Manuel Ares, William G Scott
Published 2005-01-01

Comparative genomics search for losses of long-established genes on the human lineage.

by Jingchun Zhu, J Zachary Sanborn, Mark Diekhans, Craig B Lowe, Tom H Pringle, David Haussler
Published 2007-12-01

Gene isoform specificity through enhancer-associated antisense transcription.

by Courtney S Onodera, Jason G Underwood, Sol Katzman, Frank Jacobs, David Greenberg, Sofie R Salama, David Haussler
Published 2012-01-01

RADIA: RNA and DNA integrated analysis for somatic mutation detection.

by Amie J Radenbaugh, Singer Ma, Adam Ewing, Joshua M Stuart, Eric A Collisson, Jingchun Zhu, David Haussler
Published 2014-01-01

The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families

by Jason D. Fernandes, Armando Zamudio-Hurtado, Hiram Clawson, W. James Kent, David Haussler, Sofie R. Salama, Maximilian Haeussler
Published 2020-03-01

A Recurrent Mutation in Anaplastic Lymphoma Kinase with Distinct Neoepitope Conformations

by Jugmohit S. Toor, Arjun A. Rao, Andrew C. McShan, Mark Yarmarkovich, Santrupti Nerli, Santrupti Nerli, Karissa Yamaguchi, Ada A. Madejska, Son Nguyen, Sarvind Tripathi, John M. Maris, Sofie R. Salama, Sofie R. Salama, David Haussler, David Haussler, Nikolaos G. Sgourakis
Published 2018-01-01

Identification and classification of conserved RNA secondary structures in the human genome.

by Jakob Skou Pedersen, Gill Bejerano, Adam Siepel, Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S Lander, Jim Kent, Webb Miller, David Haussler
Published 2006-04-01

Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

by Charles W Sugnet, Karpagam Srinivasan, Tyson A Clark, Georgeann O'Brien, Melissa S Cline, Hui Wang, Alan Williams, David Kulp, John E Blume, David Haussler, Manuel Ares
Published 2006-01-01

Forces shaping the fastest evolving regions in the human genome.

by Katherine S Pollard, Sofie R Salama, Bryan King, Andrew D Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S Pedersen, Gill Bejerano, Robert Baertsch, Kate R Rosenbloom, Jim Kent, David Haussler
Published 2006-10-01

Stability of SARS-CoV-2 phylogenies.

by Yatish Turakhia, Nicola De Maio, Bryan Thornlow, Landen Gozashti, Robert Lanfear, Conor R Walker, Angie S Hinrichs, Jason D Fernandes, Rui Borges, Greg Slodkowicz, Lukas Weilguny, David Haussler, Nick Goldman, Russell Corbett-Detig
Published 2020-11-01

Structurally Conserved Primate LncRNAs Are Transiently Expressed during Human Cortical Differentiation and Influence Cell-Type-Specific Genes

by Andrew R. Field, Frank M.J. Jacobs, Ian T. Fiddes, Alex P.R. Phillips, Andrea M. Reyes-Ortiz, Erin LaMontagne, Lila Whitehead, Vincent Meng, Jimi L. Rosenkrantz, Mari Olsen, Max Hauessler, Sol Katzman, Sofie R. Salama, David Haussler
Published 2019-02-01

Hydra: A mixture modeling framework for subtyping pediatric cancer cohorts using multimodal gene expression signatures.

by Jacob Pfeil, Lauren M Sanders, Ioannis Anastopoulos, A Geoffrey Lyle, Alana S Weinstein, Yuanqing Xue, Andrew Blair, Holly C Beale, Alex Lee, Stanley G Leung, Phuong T Dinh, Avanthi Tayi Shah, Marcus R Breese, W Patrick Devine, Isabel Bjork, Sofie R Salama, E Alejandro Sweet-Cordero, David Haussler, Olena Morozova Vaske
Published 2020-04-01

A user guide for the online exploration and visualization of PCAWG data

by Mary J. Goldman, Junjun Zhang, Nuno A. Fonseca, Isidro Cortés-Ciriano, Qian Xiang, Brian Craft, Elena Piñeiro-Yáñez, Brian D. O’Connor, Wojciech Bazant, Elisabet Barrera, Alfonso Muñoz-Pomer, Robert Petryszak, Anja Füllgrabe, Fatima Al-Shahrour, Maria Keays, David Haussler, John N. Weinstein, Wolfgang Huber, Alfonso Valencia, Peter J. Park, Irene Papatheodorou, Jingchun Zhu, Vincent Ferretti, Miguel Vazquez
Published 2020-07-01

Combining accurate tumor genome simulation with crowdsourcing to benchmark somatic structural variant detection

by Anna Y. Lee, Adam D. Ewing, Kyle Ellrott, Yin Hu, Kathleen E. Houlahan, J. Christopher Bare, Shadrielle Melijah G. Espiritu, Vincent Huang, Kristen Dang, Zechen Chong, Cristian Caloian, Takafumi N. Yamaguchi, ICGC-TCGA DREAM Somatic Mutation Calling Challenge Participants, Michael R. Kellen, Ken Chen, Thea C. Norman, Stephen H. Friend, Justin Guinney, Gustavo Stolovitzky, David Haussler, Adam A. Margolin, Joshua M. Stuart, Paul C. Boutros
Published 2018-11-01