Detecting interaction networks in the human microbiome with conditional Granger causality.

by Kumar Mainali, Sharon Bewick, Briana Vecchio-Pagan, David Karig, William F Fagan
Published 2019-05-01

Direct Growth of Bacteria in Headspace Vials Allows for Screening of Volatiles by Gas Chromatography Mass Spectrometry

by Collin M. Timm, Evan P. Lloyd, Amanda Egan, Ray Mariner, David Karig
Published 2018-03-01

Trait-based analysis of the human skin microbiome

by Sharon Bewick, Eliezer Gurarie, Jake L. Weissman, Jess Beattie, Cyrus Davati, Rachel Flint, Peter Thielen, Florian Breitwieser, David Karig, William F. Fagan
Published 2019-07-01

Statistical analysis of co-occurrence patterns in microbial presence-absence datasets.

by Kumar P Mainali, Sharon Bewick, Peter Thielen, Thomas Mehoke, Florian P Breitwieser, Shishir Paudel, Arjun Adhikari, Joshua Wolfe, Eric V Slud, David Karig, William F Fagan
Published 2017-01-01

Exploring the functional composition of the human microbiome using a hand-curated microbial trait database

by Jake L. Weissman, Sonia Dogra, Keyan Javadi, Samantha Bolten, Rachel Flint, Cyrus Davati, Jess Beattie, Keshav Dixit, Tejasvi Peesay, Shehar Awan, Peter Thielen, Florian Breitwieser, Philip L. F. Johnson, David Karig, William F. Fagan, Sharon Bewick
Published 2021-06-01