The challenges and importance of structural variation detection in livestock

by Derek M Bickhart, George E. Liu
Published 2014-02-01

Comparative Analysis of CNV Calling Algorithms: Literature Survey and a Case Study Using Bovine High-Density SNP Data

by George E. Liu, Derek M. Bickhart, Jiuzhou Song, Yali Hou, Lingyang Xu
Published 2013-06-01

Genomic structural differences between cattle and River Buffalo identified through comparative genomic and transcriptomic analysis

by Wenli Li, Derek M. Bickhart, Luigi Ramunno, Daniela Iamartino, John L. Williams, George E. Liu
Published 2018-08-01

The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex

by John C. Schwartz, Nicholas D. Sanderson, Nicholas D. Sanderson, Derek M. Bickhart, Timothy P. L. Smith, John A. Hammond
Published 2019-09-01

Genomic predictions combining SNP markers and copy number variations in Nellore cattle

by El Hamidi A. Hay, Yuri T. Utsunomiya, Lingyang Xu, Yang Zhou, Haroldo H. R. Neves, Roberto Carvalheiro, Derek M. Bickhart, Li Ma, Jose Fernando Garcia, George E. Liu
Published 2018-06-01

New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes

by Ruijie Liu, Wai Yee Low, Rick Tearle, Sergey Koren, Jay Ghurye, Arang Rhie, Adam M. Phillippy, Benjamin D. Rosen, Derek M. Bickhart, Timothy P. L. Smith, Stefan Hiendleder, John L. Williams
Published 2019-12-01

Cattle Sex-Specific Recombination and Genetic Control from a Large Pedigree Analysis.

by Li Ma, Jeffrey R O'Connell, Paul M VanRaden, Botong Shen, Abinash Padhi, Chuanyu Sun, Derek M Bickhart, John B Cole, Daniel J Null, George E Liu, Yang Da, George R Wiggans
Published 2015-11-01

Integrating Signals from Sperm Methylome Analysis and Genome-Wide Association Study for a Better Understanding of Male Fertility in Cattle

by Lingzhao Fang, Yang Zhou, Shuli Liu, Jicai Jiang, Derek M. Bickhart, Daniel J. Null, Bingjie Li, Steven G. Schroeder, Benjamin D. Rosen, John B. Cole, Curtis P. Van Tassell, Li Ma, George E. Liu
Published 2019-05-01

Annotated Draft Genome Assemblies for the Northern Bobwhite (Colinus virginianus) and the Scaled Quail (Callipepla squamata) Reveal Disparate Estimates of Modern Genome Diversity a...

by David L. Oldeschulte, Yvette A. Halley, Miranda L. Wilson, Eric K. Bhattarai, Wesley Brashear, Joshua Hill, Richard P. Metz, Charles D. Johnson, Dale Rollins, Markus J. Peterson, Derek M. Bickhart, Jared E. Decker, John F. Sewell, Christopher M. Seabury
Published 2017-09-01

Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

by Wai Yee Low, Rick Tearle, Derek M. Bickhart, Benjamin D. Rosen, Sarah B. Kingan, Thomas Swale, Françoise Thibaud-Nissen, Terence D. Murphy, Rachel Young, Lucas Lefevre, David A. Hume, Andrew Collins, Paolo Ajmone-Marsan, Timothy P. L. Smith, John L. Williams
Published 2019-01-01

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

by Wai Yee Low, Rick Tearle, Ruijie Liu, Sergey Koren, Arang Rhie, Derek M. Bickhart, Benjamin D. Rosen, Zev N. Kronenberg, Sarah B. Kingan, Elizabeth Tseng, Françoise Thibaud-Nissen, Fergal J. Martin, Konstantinos Billis, Jay Ghurye, Alex R. Hastie, Joyce Lee, Andy W. C. Pang, Michael P. Heaton, Adam M. Phillippy, Stefan Hiendleder, Timothy P. L. Smith, John L. Williams
Published 2020-04-01

Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

by Derek M. Bickhart, Mick Watson, Sergey Koren, Kevin Panke-Buisse, Laura M. Cersosimo, Maximilian O. Press, Curtis P. Van Tassell, Jo Ann S. Van Kessel, Bradd J. Haley, Seon Woo Kim, Cheryl Heiner, Garret Suen, Kiranmayee Bakshy, Ivan Liachko, Shawn T. Sullivan, Phillip R. Myer, Jay Ghurye, Mihai Pop, Paul J. Weimer, Adam M. Phillippy, Timothy P. L. Smith
Published 2019-08-01

Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor

by Laercio R. Porto-Neto, Derek M. Bickhart, Antonio J. Landaeta-Hernandez, Yuri T. Utsunomiya, Yuri T. Utsunomiya, Melvin Pagan, Esbal Jimenez, Peter J. Hansen, Serdal Dikmen, Steven G. Schroeder, Eui-Soo Kim, Jiajie Sun, Edward Crespo, Norman Amati, John B. Cole, Daniel J. Null, Jose F. Garcia, Jose F. Garcia, Jose F. Garcia, Antonio Reverter, William Barendse, Tad S. Sonstegard
Published 2018-02-01