Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments

by Jeffrey A. Thompson, Devin C. Koestler
Published 2020-02-01

pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)

by Stefan Graw, Rosalyn Henn, Jeffrey A. Thompson, Devin C. Koestler
Published 2019-04-01

Absence of an embryonic stem cell DNA methylation signature in human cancer

by Ze Zhang, John K. Wiencke, Devin C. Koestler, Lucas A. Salas, Brock C. Christensen, Karl T. Kelsey
Published 2019-07-01

Subject level clustering using a negative binomial model for small transcriptomic studies

by Qian Li, Janelle R. Noel-MacDonnell, Devin C. Koestler, Ellen L. Goode, Brooke L. Fridley
Published 2018-12-01

Placental FKBP5 genetic and epigenetic variation is associated with infant neurobehavioral outcomes in the RICHS cohort.

by Alison G Paquette, Barry M Lester, Devin C Koestler, Corina Lesseur, David A Armstrong, Carmen J Marsit
Published 2014-01-01

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray

by Lucas A. Salas, Devin C. Koestler, Rondi A. Butler, Helen M. Hansen, John K. Wiencke, Karl T. Kelsey, Brock C. Christensen
Published 2018-05-01

Serum dioxin and DNA methylation in the sperm of operation ranch hand veterans exposed to Agent Orange

by Karl T. Kelsey, Matthew Rytel, Edward Dere, Rondi Butler, Melissa Eliot, Susan M. Huse, E. Andres Houseman, Devin C. Koestler, Kim Boekelheide
Published 2019-10-01

Evolving impact of long-term survival results on metastatic melanoma treatment

by Mitchell W Braun, Haitham Abdelhakim, Meizhang Li, Stephen Hyter, Ziyan Pessetto, Devin C Koestler, Harsh B Pathak, Neil Dunavin, Andrew K Godwin
Published 2020-07-01

Adherent cell depletion promotes the expansion of renal cell carcinoma infiltrating T cells with optimal characteristics for adoptive transfer

by Mitchell W Braun, Haitham Abdelhakim, Meizhang Li, Stephen Hyter, Ziyan Pessetto, Devin C Koestler, Harsh B Pathak, Neil Dunavin, Andrew K Godwin
Published 2020-07-01

The aquaglyceroporin AQP9 contributes to the sex-specific effects of in utero arsenic exposure on placental gene expression

by Emily F. Winterbottom, Devin C. Koestler, Dennis Liang Fei, Eric Wika, Anthony J. Capobianco, Carmen J. Marsit, Margaret R. Karagas, David J. Robbins
Published 2017-06-01

AHRR methylation in heavy smokers: associations with smoking, lung cancer risk, and lung cancer mortality

by Laurie Grieshober, Stefan Graw, Matt J. Barnett, Mark D. Thornquist, Gary E. Goodman, Chu Chen, Devin C. Koestler, Carmen J. Marsit, Jennifer A. Doherty
Published 2020-09-01

Comparisons of oral, intestinal, and pancreatic bacterial microbiomes in patients with pancreatic cancer and other gastrointestinal diseases

by Mei Chung, Naisi Zhao, Richard Meier, Devin C. Koestler, Guojun Wu, Erika del Castillo, Bruce J. Paster, Kevin Charpentier, Jacques Izard, Karl T. Kelsey, Dominique S. Michaud
Published 2021-01-01

Improving the efficiency of clinical trials by standardizing processes for Investigator Initiated Trials

by Dinesh Pal Mudaranthakam, Milind A. Phadnis, Ron Krebill, Lauren Clark, Jo A. Wick, Jeffrey Thompson, John Keighley, Byron J. Gajewski, Devin C. Koestler, Matthew S. Mayo
Published 2020-06-01

Genome wide DNA methylation profiles provide clues to the origin and pathogenesis of germ cell tumors.

by Martin A Rijlaarsdam, David M J Tax, Ad J M Gillis, Lambert C J Dorssers, Devin C Koestler, Jeroen de Ridder, Leendert H J Looijenga
Published 2015-01-01

GLI3 Links Environmental Arsenic Exposure and Human Fetal Growth

by Emily F. Winterbottom, Dennis L. Fei, Devin C. Koestler, Camilla Giambelli, Eric Wika, Anthony J. Capobianco, Ethan Lee, Carmen J. Marsit, Margaret R. Karagas, David J. Robbins
Published 2015-06-01

Optimizing Retrieval of Biospecimens Using the Curated Cancer Clinical Outcomes Database (C3OD)

by Dinesh Pal Mudaranthakam, Elena Shergina, Michele Park, Jeffrey Thompson, David Streeter, Jinxiang Hu, Jo Wick, Byron Gajewski, Devin C Koestler, Andrew K Godwin, Roy A Jensen, Matthew S Mayo
Published 2019-11-01

Evolutionary Analysis of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Reveals Genomic Divergence with Implications for Universal Vaccine Efficacy

by Nanda Kumar Yellapu, Shachi Patel, Bo Zhang, Richard Meier, Lisa Neums, Dong Pei, Qing Xia, Duncan Rotich, Rosalyn C. Zimmermann, Emily Nissen, Shelby Bell-Glenn, Whitney Shae, Jinxiang Hu, Prabhakar Chalise, Lynn Chollet-Hinton, Devin C. Koestler, Jeffery A. Thompson
Published 2020-10-01