Persistence of functional microbiota composition across generations

by Christian Ramos, Mario Calus, Dirkjan Schokker
Published 2021-09-01

Plasticity of intestinal gene expression profile signatures reflected by nutritional interventions in piglets

by Dirkjan Schokker, Ina Hulsegge, Henri Woelders, Johanna M. J. Rebel
Published 2019-05-01

Building pathway graphs from BioPAX data in R [version 1; referees: 1 approved, 2 approved with reservations]

by Nirupama Benis, Dirkjan Schokker, Frank Kramer, Mari A. Smits, Maria Suarez-Diez
Published 2016-09-01

Enrichment of in vivo transcription data from dietary intervention studies with in vitro data provides improved insight into gene regulation mechanisms in the intestinal mucosa

by Marcel Hulst, Alfons Jansman, Ilonka Wijers, Arjan Hoekman, Stéphanie Vastenhouw, Marinus van Krimpen, Mari Smits, Dirkjan Schokker
Published 2017-04-01

Local intestinal microbiota response and systemic effects of feeding black soldier fly larvae to replace soybean meal in growing pigs

by Soumya K. Kar, Dirkjan Schokker, Amy C. Harms, Leo Kruijt, Mari A. Smits, Alfons J. M. Jansman
Published 2021-07-01

Environmentally enriched housing conditions affect pig welfare, immune system and gut microbiota in early life

by Caifang Wen, Ingrid van Dixhoorn, Dirkjan Schokker, Henri Woelders, Norbert Stockhofe-Zurwieden, Johanna M. J. Rebel, Hauke Smidt
Published 2021-07-01

Sanitary Conditions Affect the Colonic Microbiome and the Colonic and Systemic Metabolome of Female Pigs

by Marinus F. W. te Pas, Alfons J. M. Jansman, Leo Kruijt, Yvonne van der Meer, Jacques J. M. Vervoort, Dirkjan Schokker
Published 2020-10-01

Long-lasting effects of early-life antibiotic treatment and routine animal handling on gut microbiota composition and immune system in pigs.

by Dirkjan Schokker, Jing Zhang, Stéphanie A Vastenhouw, Hans G H J Heilig, Hauke Smidt, Johanna M J Rebel, Mari A Smits
Published 2015-01-01

Early-life environmental variation affects intestinal microbiota and immune development in new-born piglets.

by Dirkjan Schokker, Jing Zhang, Ling-Li Zhang, Stéphanie A Vastenhouw, Hans G H J Heilig, Hauke Smidt, Johanna M J Rebel, Mari A Smits
Published 2014-01-01

High-level integration of murine intestinal transcriptomics data highlights the importance of the complement system in mucosal homeostasis

by Nirupama Benis, Jerry M. Wells, Mari A. Smits, Soumya Kanti Kar, Bart van der Hee, Vitor A. P. Martins dos Santos, Maria Suarez-Diez, Dirkjan Schokker
Published 2019-12-01

Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them

by Nirupama Benis, Soumya K. Kar, Vitor A. P. Martins dos Santos, Vitor A. P. Martins dos Santos, Mari A. Smits, Mari A. Smits, Dirkjan Schokker, Maria Suarez-Diez
Published 2017-06-01

Dietary protein sources differentially affect microbiota, mTOR activity and transcription of mTOR signaling pathways in the small intestine.

by Soumya K Kar, Alfons J M Jansman, Nirupama Benis, Javier Ramiro-Garcia, Dirkjan Schokker, Leo Kruijt, Ellen H Stolte, Johanna J Taverne-Thiele, Mari A Smits, Jerry M Wells
Published 2017-01-01

Effects of undigested protein-rich ingredients on polarised small intestinal organoid monolayers

by Soumya K. Kar, Bart van der Hee, Linda M. P. Loonen, Nico Taverne, Johanna J. Taverne-Thiele, Dirkjan Schokker, Mari A. Smits, Alfons J. M. Jansman, Jerry M. Wells
Published 2020-05-01

Amine Metabolism Is Influenced by Dietary Protein Source

by Soumya K. Kar, Soumya K. Kar, Alfons J. M. Jansman, Dirkjan Schokker, Leo Kruijt, Amy C. Harms, Amy C. Harms, Jerry M. Wells, Mari A. Smits, Mari A. Smits, Mari A. Smits
Published 2017-09-01