Reviving the Transcriptome Studies: An Insight Into the Emergence of Single-Molecule Transcriptome Sequencing

by Bo Wang, Vivek Kumar, Andrew Olson, Doreen Ware, Doreen Ware
Published 2019-04-01

Genome-wide computational prediction and analysis of core promoter elements across plant monocots and dicots.

by Sunita Kumari, Doreen Ware
Published 2013-01-01

Efficient Identification of Causal Mutations through Sequencing of Bulked F2 from Two Allelic Bloomless Mutants of Sorghum bicolor

by Yinping Jiao, Yinping Jiao, Gloria Burow, Nicholas Gladman, Veronica Acosta-Martinez, Junping Chen, John Burke, Doreen Ware, Doreen Ware, Zhanguo Xin
Published 2018-01-01

Characterization of miRNAs in response to short-term waterlogging in three inbred lines of Zea mays.

by Zhijie Liu, Sunita Kumari, Lifang Zhang, Yonglian Zheng, Doreen Ware
Published 2012-01-01

Identification of the First Nuclear Male Sterility Gene (Male‐sterile 9) in Sorghum

by Junping Chen, Yinping Jiao, Haydee Laza, Paxton Payton, Doreen Ware, Zhanguo Xin
Published 2019-11-01

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences.

by Nirav Merchant, Eric Lyons, Stephen Goff, Matthew Vaughn, Doreen Ware, David Micklos, Parker Antin
Published 2016-01-01

Rapid genomic characterization of the genus vitis.

by Sean Myles, Jer-Ming Chia, Bonnie Hurwitz, Charles Simon, Gan Yuan Zhong, Edward Buckler, Doreen Ware
Published 2010-01-01

Expanding and Vetting Sorghum bicolor Gene Annotations through Transcriptome and Methylome Sequencing

by Andrew Olson, Robert R. Klein, Diana V. Dugas, Zhenyuan Lu, Michael Regulski, Patricia E. Klein, Doreen Ware
Published 2014-07-01

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing

by Bo Wang, Elizabeth Tseng, Michael Regulski, Tyson A Clark, Ting Hon, Yinping Jiao, Zhenyuan Lu, Andrew Olson, Joshua C. Stein, Doreen Ware
Published 2016-06-01

Sorghum <i>MSD3</i> Encodes an ω-3 Fatty Acid Desaturase that Increases Grain Number by Reducing Jasmonic Acid Levels

by Lavanya Dampanaboina, Yinping Jiao, Junping Chen, Nicholas Gladman, Ratan Chopra, Gloria Burow, Chad Hayes, Shawn A. Christensen, John Burke, Doreen Ware, Zhanguo Xin
Published 2019-10-01

MSD1 regulates pedicellate spikelet fertility in sorghum through the jasmonic acid pathway

by Yinping Jiao, Young Koung Lee, Nicholas Gladman, Ratan Chopra, Shawn A. Christensen, Michael Regulski, Gloria Burow, Chad Hayes, John Burke, Doreen Ware, Zhanguo Xin
Published 2018-02-01

A genome-wide characterization of microRNA genes in maize.

by Lifang Zhang, Jer-Ming Chia, Sunita Kumari, Joshua C Stein, Zhijie Liu, Apurva Narechania, Christopher A Maher, Katherine Guill, Michael D McMullen, Doreen Ware
Published 2009-11-01

Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module

by Nicholas Gladman, Yinping Jiao, Young Koung Lee, Lifang Zhang, Ratan Chopra, Michael Regulski, Gloria Burow, Chad Hayes, Shawn A. Christensen, Lavanya Dampanaboina, Junping Chen, John Burke, Doreen Ware, Zhanguo Xin
Published 2019-10-01

Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane

by Augusto Lima Diniz, Danielle Izilda Rodrigues da Silva, Carolina Gimiliani Lembke, Maximiller Dal-Bianco Lamas Costa, Felipe ten-Caten, Forrest Li, Romel Duarte Vilela, Marcelo Menossi, Doreen Ware, Lauricio Endres, Glaucia Mendes Souza
Published 2020-11-01

Maize Metabolic Network Construction and Transcriptome Analysis

by Marcela K. Monaco, Taner Z. Sen, Palitha D. Dharmawardhana, Liya Ren, Mary Schaeffer, Sushma Naithani, Vindhya Amarasinghe, Jim Thomason, Lisa Harper, Jack Gardiner, Ethalinda K.S. Cannon, Carolyn J. Lawrence, Doreen Ware, Pankaj Jaiswal
Published 2013-03-01

Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

by Shujun Ou, Weija Su, Yi Liao, Kapeel Chougule, Jireh R. A. Agda, Adam J. Hellinga, Carlos Santiago Blanco Lugo, Tyler A. Elliott, Doreen Ware, Thomas Peterson, Ning Jiang, Candice N. Hirsch, Matthew B. Hufford
Published 2019-12-01

A single molecule scaffold for the maize genome.

by Shiguo Zhou, Fusheng Wei, John Nguyen, Mike Bechner, Konstantinos Potamousis, Steve Goldstein, Louise Pape, Michael R Mehan, Chris Churas, Shiran Pasternak, Dan K Forrest, Roger Wise, Doreen Ware, Rod A Wing, Michael S Waterman, Miron Livny, David C Schwartz
Published 2009-11-01

Microdissection of shoot meristem functional domains.

by Lionel Brooks, Josh Strable, Xiaolan Zhang, Kazuhiro Ohtsu, Ruilian Zhou, Ananda Sarkar, Sarah Hargreaves, Robert J Elshire, Douglas Eudy, Teresa Pawlowska, Doreen Ware, Diane Janick-Buckner, Brent Buckner, Marja C P Timmermans, Patrick S Schnable, Dan Nettleton, Michael J Scanlon
Published 2009-05-01

Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus

by Cheng Zou, Avinash Karn, Bruce Reisch, Allen Nguyen, Yongming Sun, Yun Bao, Michael S. Campbell, Deanna Church, Stephen Williams, Xia Xu, Craig A. Ledbetter, Sagar Patel, Anne Fennell, Jeffrey C. Glaubitz, Matthew Clark, Doreen Ware, Jason P. Londo, Qi Sun, Lance Cadle-Davidson
Published 2020-01-01

Double triage to identify poorly annotated genes in maize: The missing link in community curation.

by Marcela K Tello-Ruiz, Cristina F Marco, Fei-Man Hsu, Rajdeep S Khangura, Pengfei Qiao, Sirjan Sapkota, Michelle C Stitzer, Rachael Wasikowski, Hao Wu, Junpeng Zhan, Kapeel Chougule, Lindsay C Barone, Cornel Ghiban, Demitri Muna, Andrew C Olson, Liya Wang, Doreen Ware, David A Micklos
Published 2019-01-01